Human Gene ADAM15 (ENST00000356955.7_5) from GENCODE V47lift37
  Description: ADAM metallopeptidase domain 15, transcript variant 6 (from RefSeq NM_207197.3)
Gencode Transcript: ENST00000356955.7_5
Gencode Gene: ENSG00000143537.14_9
Transcript (Including UTRs)
   Position: hg19 chr1:155,023,792-155,035,251 Size: 11,460 Total Exon Count: 23 Strand: +
Coding Region
   Position: hg19 chr1:155,023,863-155,034,978 Size: 11,116 Coding Exon Count: 23 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:155,023,792-155,035,251)mRNA (may differ from genome)Protein (863 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ADA15_HUMAN
DESCRIPTION: RecName: Full=Disintegrin and metalloproteinase domain-containing protein 15; Short=ADAM 15; EC=3.4.24.-; AltName: Full=Metalloprotease RGD disintegrin protein; AltName: Full=Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 15; Short=MDC-15; AltName: Full=Metargidin; Flags: Precursor;
FUNCTION: Active metalloproteinase with gelatinolytic and collagenolytic activity. Plays a role in the wound healing process. Mediates both heterotypic intraepithelial cell/T-cell interactions and homotypic T-cell aggregation. Inhibits beta-1 integrin-mediated cell adhesion and migration of airway smooth muscle cells. Suppresses cell motility on or towards fibronectin possibly by driving alpha-v/beta-1 integrin (ITAGV-ITGB1) cell surface expression via ERK1/2 inactivation. Cleaves E-cadherin in response to growth factor deprivation. Plays a role in glomerular cell migration. Plays a role in pathological neovascularization. May play a role in cartilage remodeling. May be proteolytically processed, during sperm epididymal maturation and the acrosome reaction. May play a role in sperm-egg binding through its disintegrin domain.
COFACTOR: Binds 1 zinc ion per subunit (By similarity).
ENZYME REGULATION: Inhibited by hydroxamate-type metalloproteinase inhibitors such as marimastat. Inhibited by metalloproteinase inhibitor 2 (TIMP-2) and TIMP-3 at nanomolar concentrations. Not significantly inhibited by TIMP-1 at concentrations of up to 100 nM. Not activated by PMA or ionomycin.
SUBUNIT: Interacts with ITAGV-ITGB3 (vitronectin receptor), PACSIN3 and SNX9. PACSIN3 and SNX9 preferentially bind the precursor but not the processed form of ADAM15, suggesting that the interaction occurs in a secretory pathway compartment prior to the medial Golgi (By similarity). Interacts with ITAG9-ITGB1 (By similarity). Interacts specifically with Src family protein- tyrosine kinases (PTKs). Interacts with SH3PXD2A. Interacts with ITAGV-ITGB1. Interacts with GRB2, HCK, ITSN1, ITSN2, LYN, MAPK1, MAPK3, NCF1, NCK1, nephrocystin, PTK6, SNX33, LCK and SRC.
INTERACTION: Q9UKS6:PACSIN3; NbExp=2; IntAct=EBI-77818, EBI-77926; Q99962:SH3GL2; NbExp=2; IntAct=EBI-77818, EBI-77938;
SUBCELLULAR LOCATION: Endomembrane system; Single-pass type I membrane protein. Cell junction, adherens junction. Cell projection, cilium, flagellum (By similarity). Cytoplasmic vesicle, secretory vesicle, acrosome (By similarity). Note=The majority of the protein is localized in a perinuclear compartment which may correspond to the trans-Golgi network or the late endosome. The pro-protein is the major detectable form on the cell surface, whereas the majority of the protein in the cell is processed (By similarity).
TISSUE SPECIFICITY: Expressed in colon and small intestine. Expressed in airway smooth muscle and glomerular mesangial cells (at protein level). Ubiquitously expressed. Overexpressed in atherosclerotic lesions. Constitutively expressed in cultured endothelium and smooth muscle. Expressed in chondrocytes. Expressed in airway smooth muscle and glomerular mesangial cells.
DOMAIN: The cytoplasmic domain interacts with endophilin I and sorting nexin 9 (By similarity).
DOMAIN: Disintegrin domain binds to integrin alphaV-beta3.
DOMAIN: The conserved cysteine present in the cysteine-switch motif binds the catalytic zinc ion, thus inhibiting the enzyme. The dissociation of the cysteine from the zinc ion upon the activation-peptide release activates the enzyme.
PTM: The precursor is cleaved by a furin endopeptidase (By similarity).
PTM: Phosphorylation increases association with PTKs.
SIMILARITY: Contains 1 disintegrin domain.
SIMILARITY: Contains 1 EGF-like domain.
SIMILARITY: Contains 1 peptidase M12B domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 75.57 RPKM in Skin - Sun Exposed (Lower leg)
Total median expression: 1365.11 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -29.7071-0.418 Picture PostScript Text
3' UTR -120.70273-0.442 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR006586 - ADAM_Cys-rich
IPR001762 - Blood-coag_inhib_Disintegrin
IPR000742 - EG-like_dom
IPR013032 - EGF-like_CS
IPR024079 - MetalloPept_cat_dom
IPR001590 - Peptidase_M12B
IPR002870 - Peptidase_M12B_N

Pfam Domains:
PF00200 - Disintegrin
PF01421 - Reprolysin (M12B) family zinc metalloprotease
PF01562 - Reprolysin family propeptide
PF08516 - ADAM cysteine-rich
PF13574 - Metallo-peptidase family M12B Reprolysin-like
PF13582 - Metallo-peptidase family M12B Reprolysin-like
PF13583 - Metallo-peptidase family M12B Reprolysin-like
PF13688 - Metallo-peptidase family M12

SCOP Domains:
55486 - Metalloproteases ("zincins"), catalytic domain
57552 - Blood coagulation inhibitor (disintegrin)

ModBase Predicted Comparative 3D Structure on Q13444
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004222 metalloendopeptidase activity
GO:0005178 integrin binding
GO:0005515 protein binding
GO:0008233 peptidase activity
GO:0008237 metallopeptidase activity
GO:0016787 hydrolase activity
GO:0017124 SH3 domain binding
GO:0046872 metal ion binding

Biological Process:
GO:0001525 angiogenesis
GO:0001953 negative regulation of cell-matrix adhesion
GO:0002418 immune response to tumor cell
GO:0006508 proteolysis
GO:0007155 cell adhesion
GO:0007160 cell-matrix adhesion
GO:0007229 integrin-mediated signaling pathway
GO:0008584 male gonad development
GO:0022617 extracellular matrix disassembly
GO:0030198 extracellular matrix organization
GO:0030308 negative regulation of cell growth
GO:0030336 negative regulation of cell migration
GO:0030574 collagen catabolic process
GO:0042246 tissue regeneration
GO:0045087 innate immune response
GO:0060317 cardiac epithelial to mesenchymal transition
GO:1900121 negative regulation of receptor binding
GO:1904628 cellular response to phorbol 13-acetate 12-myristate
GO:0006915 apoptotic process

Cellular Component:
GO:0001669 acrosomal vesicle
GO:0005886 plasma membrane
GO:0005912 adherens junction
GO:0005929 cilium
GO:0009986 cell surface
GO:0012505 endomembrane system
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030054 cell junction
GO:0031410 cytoplasmic vesicle
GO:0031514 motile cilium
GO:0042995 cell projection
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  AB209157 - Homo sapiens mRNA for ADAM15 isoform 6a variant protein.
LF206183 - JP 2014500723-A/13686: Polycomb-Associated Non-Coding RNAs.
AY560593 - Homo sapiens ADAM15 isoform 1 (ADAM15) mRNA, complete cds, alternatively spliced.
AY560594 - Homo sapiens ADAM15 isoform 2 (ADAM15) mRNA, complete cds, alternatively spliced.
AY560595 - Homo sapiens ADAM15 isoform 3a (ADAM15) mRNA, complete cds, alternatively spliced.
AY560596 - Homo sapiens ADAM15 isoform 4a (ADAM15) mRNA, complete cds, alternatively spliced.
AY560597 - Homo sapiens ADAM15 isoform 5 (ADAM15) mRNA, complete cds, alternatively spliced.
AY560598 - Homo sapiens ADAM15 isoform 6a (ADAM15) mRNA, complete cds, alternatively spliced.
AY560599 - Homo sapiens ADAM15 isoform 6b (ADAM15) mRNA, complete cds, alternatively spliced.
AY560600 - Homo sapiens ADAM15 isoform 7a (ADAM15) mRNA, complete cds, alternatively spliced.
AY560601 - Homo sapiens ADAM15 isoform 7b (ADAM15) mRNA, complete cds, alternatively spliced.
AY576417 - Homo sapiens ADAM15 isoform 8 (ADAM15) mRNA, complete cds, alternatively spliced.
AK000667 - Homo sapiens cDNA FLJ20660 fis, clone KAT00151, highly similar to U41767 Human metargidin precursor mRNA.
BC014566 - Homo sapiens ADAM metallopeptidase domain 15, mRNA (cDNA clone MGC:2122 IMAGE:2958341), complete cds.
AK075498 - Homo sapiens cDNA PSEC0196 fis, clone HEMBA1001414, highly similar to ADAM 15 precursor (EC 3.4.24.-) (Adisintegrin and metalloproteinase domain 15).
AK308172 - Homo sapiens cDNA, FLJ98120.
AK295614 - Homo sapiens cDNA FLJ53336 complete cds, highly similar to ADAM 15 precursor (EC 3.4.24.-) (Adisintegrin and metalloproteinase domain 15).
AK296925 - Homo sapiens cDNA FLJ54721 complete cds, highly similar to ADAM 15 precursor (EC 3.4.24.-) (Adisintegrin and metalloproteinase domain 15).
AK297468 - Homo sapiens cDNA FLJ53362 complete cds, highly similar to ADAM 15 precursor (EC 3.4.24.-) (Adisintegrin and metalloproteinase domain 15).
U41767 - Human metargidin precursor mRNA, complete cds.
EU176173 - Synthetic construct Homo sapiens clone IMAGE:100006340; FLH165208.01X; RZPDo839A02250D ADAM metallopeptidase domain 15 (ADAM15) gene, encodes complete protein.
AB590397 - Synthetic construct DNA, clone: pFN21AE1324, Homo sapiens ADAM15 gene for ADAM metallopeptidase domain 15, without stop codon, in Flexi system.
AY518542 - Homo sapiens ADAM-15 precursor mRNA, complete cds.
BT009764 - Homo sapiens a disintegrin and metalloproteinase domain 15 (metargidin) mRNA, complete cds.
U46005 - Human MDC15 mRNA, complete cds.
LF352227 - JP 2014500723-A/159730: Polycomb-Associated Non-Coding RNAs.
LF352225 - JP 2014500723-A/159728: Polycomb-Associated Non-Coding RNAs.
LF352224 - JP 2014500723-A/159727: Polycomb-Associated Non-Coding RNAs.
LF206182 - JP 2014500723-A/13685: Polycomb-Associated Non-Coding RNAs.
JD051833 - Sequence 32857 from Patent EP1572962.
JD547421 - Sequence 528445 from Patent EP1572962.
LF352223 - JP 2014500723-A/159726: Polycomb-Associated Non-Coding RNAs.
LF352222 - JP 2014500723-A/159725: Polycomb-Associated Non-Coding RNAs.
JD520275 - Sequence 501299 from Patent EP1572962.
JD520276 - Sequence 501300 from Patent EP1572962.
MA587804 - JP 2018138019-A/159730: Polycomb-Associated Non-Coding RNAs.
MA587802 - JP 2018138019-A/159728: Polycomb-Associated Non-Coding RNAs.
MA587801 - JP 2018138019-A/159727: Polycomb-Associated Non-Coding RNAs.
MA587800 - JP 2018138019-A/159726: Polycomb-Associated Non-Coding RNAs.
MA587799 - JP 2018138019-A/159725: Polycomb-Associated Non-Coding RNAs.
MA441760 - JP 2018138019-A/13686: Polycomb-Associated Non-Coding RNAs.
MA441759 - JP 2018138019-A/13685: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q13444 (Reactome details) participates in the following event(s):

R-HSA-8941234 SH3PXD2A binds ADAM12,ADAM15,ADAM19
R-HSA-4224014 E-cadherin degradation by ADAM10, ADAM15
R-HSA-8941237 Invadopodia formation
R-HSA-1474228 Degradation of the extracellular matrix
R-HSA-1474244 Extracellular matrix organization

-  Other Names for This Gene
  Alternate Gene Symbols: ADA15_HUMAN, B3KQU5, B4DLB5, B4DMH8, E9PN65, ENST00000356955.1, ENST00000356955.2, ENST00000356955.3, ENST00000356955.4, ENST00000356955.5, ENST00000356955.6, MDC15, NM_207197, Q13444, Q13493, Q53XQ0, Q5SR68, Q5SR69, Q6R267, Q71S61, Q71S62, Q71S63, Q71S64, Q71S65, Q71S66, Q71S67, Q71S68, Q71S69, Q96C78, U3KQL5, uc317zur.1, uc317zur.2
UCSC ID: ENST00000356955.7_5
RefSeq Accession: NM_207197.3
Protein: Q13444 (aka ADA15_HUMAN or AD15_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.