Human Gene ALDH18A1 (ENST00000371224.7_13) from GENCODE V47lift37
  Description: aldehyde dehydrogenase 18 family member A1, transcript variant 1 (from RefSeq NM_002860.4)
Gencode Transcript: ENST00000371224.7_13
Gencode Gene: ENSG00000059573.9_15
Transcript (Including UTRs)
   Position: hg19 chr10:97,365,698-97,416,468 Size: 50,771 Total Exon Count: 18 Strand: -
Coding Region
   Position: hg19 chr10:97,366,519-97,413,134 Size: 46,616 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:97,365,698-97,416,468)mRNA (may differ from genome)Protein (795 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: P5CS_HUMAN
DESCRIPTION: RecName: Full=Delta-1-pyrroline-5-carboxylate synthase; Short=P5CS; AltName: Full=Aldehyde dehydrogenase family 18 member A1; Includes: RecName: Full=Glutamate 5-kinase; Short=GK; EC=2.7.2.11; AltName: Full=Gamma-glutamyl kinase; Includes: RecName: Full=Gamma-glutamyl phosphate reductase; Short=GPR; EC=1.2.1.41; AltName: Full=Glutamate-5-semialdehyde dehydrogenase; AltName: Full=Glutamyl-gamma-semialdehyde dehydrogenase;
FUNCTION: Bifunctional enzyme that converts glutamate to glutamate 5-semialdehyde, an intermediate in the biosynthesis of proline, ornithine and arginine.
CATALYTIC ACTIVITY: ATP + L-glutamate = ADP + L-glutamate 5- phosphate.
CATALYTIC ACTIVITY: L-glutamate 5-semialdehyde + phosphate + NADP(+) = L-glutamyl 5-phosphate + NADPH.
ENZYME REGULATION: Isoform Short is inhibited by L-ornithine with a Ki of approximately 0.25 mm. Isoform Long is insensitive to ornithine inhibition. This is due to the two amino acid insert which abolishes feedback inhibition of P5CS activity by L- ornithine.
PATHWAY: Amino-acid biosynthesis; L-proline biosynthesis; L- glutamate 5-semialdehyde from L-glutamate: step 1/2.
PATHWAY: Amino-acid biosynthesis; L-proline biosynthesis; L- glutamate 5-semialdehyde from L-glutamate: step 2/2.
SUBCELLULAR LOCATION: Mitochondrion inner membrane.
DISEASE: Defects in ALDH18A1 are the cause of cutis laxa, autosomal recessive, type 3A (ARCL3A) [MIM:219150]. A syndrome characterized by facial dysmorphism with a progeroid appearance, large and late-closing fontanel, cutis laxa, joint hyperlaxity, athetoid movements and hyperreflexia, pre- and postnatal growth retardation, intellectual deficit, developmental delay, and ophthalmologic abnormalities.
SIMILARITY: In the N-terminal section; belongs to the glutamate 5- kinase family.
SIMILARITY: In the C-terminal section; belongs to the gamma- glutamyl phosphate reductase family.
SEQUENCE CAUTION: Sequence=BAH12086.1; Type=Erroneous initiation; Sequence=BAH13064.1; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ALDH18A1
Diseases sorted by gene-association score: spastic paraplegia 9a, autosomal dominant* (1580), spastic paraplegia 9b, autosomal recessive* (1580), cutis laxa, autosomal recessive, type iiia* (1550), cutis laxa, autosomal dominant 3* (1230), spastic paraplegia 9* (418), de barsy syndrome* (400), autosomal dominant complex spastic paraplegia type 9b* (350), cutis laxa, autosomal dominant* (219), aldh18a1-related cutis laxa* (100), cutis laxa (20), wrinkles (18), hyperammonemia (13), impulse control disorder (5), intestinal perforation (5), intellectual disability (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 40.56 RPKM in Small Intestine - Terminal Ileum
Total median expression: 615.45 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -43.30143-0.303 Picture PostScript Text
3' UTR -222.30821-0.271 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR016161 - Ald_DH/histidinol_DH
IPR016163 - Ald_DH_C
IPR016162 - Ald_DH_N
IPR015590 - Aldehyde_DH_dom
IPR001048 - Asp/Glu/Uridylate_kinase
IPR000965 - G-glutamylP_reductase
IPR020593 - G-glutamylP_reductase_CS
IPR001057 - Glu/AcGlu_kinase
IPR019797 - Glutamate_5-kinase_CS
IPR005766 - P5_carboxy_syn

Pfam Domains:
PF00171 - Aldehyde dehydrogenase family
PF00696 - Amino acid kinase family

SCOP Domains:
53633 - Carbamate kinase-like
53720 - ALDH-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2H5G - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P54886
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologGenome Browser
Gene Details    Gene Details
Gene Sorter    Gene Sorter
  Ensembl  SGD
     Protein Sequence
     Alignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003723 RNA binding
GO:0003824 catalytic activity
GO:0004349 glutamate 5-kinase activity
GO:0004350 glutamate-5-semialdehyde dehydrogenase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016491 oxidoreductase activity
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor
GO:0016740 transferase activity
GO:0017084 delta1-pyrroline-5-carboxylate synthetase activity
GO:0042802 identical protein binding

Biological Process:
GO:0006536 glutamate metabolic process
GO:0006561 proline biosynthetic process
GO:0006592 ornithine biosynthetic process
GO:0008152 metabolic process
GO:0008652 cellular amino acid biosynthetic process
GO:0016310 phosphorylation
GO:0019240 citrulline biosynthetic process
GO:0055114 oxidation-reduction process
GO:0055129 L-proline biosynthetic process

Cellular Component:
GO:0005737 cytoplasm
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005829 cytosol
GO:0016020 membrane


-  Descriptions from all associated GenBank mRNAs
  BC106054 - Homo sapiens aldehyde dehydrogenase 18 family, member A1, mRNA (cDNA clone MGC:117316 IMAGE:6156087), complete cds.
AK225455 - Homo sapiens mRNA for pyrroline-5-carboxylate synthetase isoform 1 variant, clone: HSI04587.
AK225465 - Homo sapiens mRNA for pyrroline-5-carboxylate synthetase isoform 1 variant, clone: HSI06188.
AK226032 - Homo sapiens mRNA for pyrroline-5-carboxylate synthetase isoform 1 variant, clone: FCC103H04.
U68758 - Human pyrroline-5-carboxylate synthase (P5Cs) mRNA, complete cds.
U76542 - Human pyrroline-5-carboxylate synthase long form (P5CSL) mRNA, complete cds.
BC117240 - Homo sapiens aldehyde dehydrogenase 18 family, member A1, mRNA (cDNA clone MGC:150849 IMAGE:40125791), complete cds.
BC117242 - Homo sapiens aldehyde dehydrogenase 18 family, member A1, mRNA (cDNA clone MGC:150851 IMAGE:40125793), complete cds.
BC143930 - Homo sapiens aldehyde dehydrogenase 18 family, member A1, mRNA (cDNA clone MGC:177465 IMAGE:9052448), complete cds.
X94453 - H.sapiens mRNA for pyrroline 5-carboxylate synthetase.
AK299557 - Homo sapiens cDNA FLJ53175 complete cds, highly similar to Delta 1-pyrroline-5-carboxylate synthetase.
AK295487 - Homo sapiens cDNA FLJ53996 complete cds, highly similar to Delta 1-pyrroline-5-carboxylate synthetase.
AK312271 - Homo sapiens cDNA, FLJ92568, highly similar to Homo sapiens aldehyde dehydrogenase 18 family, member A1(ALDH18A1), mRNA.
HQ258499 - Synthetic construct Homo sapiens clone IMAGE:100072928 aldehyde dehydrogenase 18 family, member A1 (ALDH18A1) gene, encodes complete protein.
AK126355 - Homo sapiens cDNA FLJ44384 fis, clone TRACH3036309.
JD297828 - Sequence 278852 from Patent EP1572962.
JD433176 - Sequence 414200 from Patent EP1572962.
JD056053 - Sequence 37077 from Patent EP1572962.
JD547791 - Sequence 528815 from Patent EP1572962.
JD469434 - Sequence 450458 from Patent EP1572962.
JD235474 - Sequence 216498 from Patent EP1572962.
JD332930 - Sequence 313954 from Patent EP1572962.
JD369524 - Sequence 350548 from Patent EP1572962.
JD377094 - Sequence 358118 from Patent EP1572962.
JD249329 - Sequence 230353 from Patent EP1572962.
JD543774 - Sequence 524798 from Patent EP1572962.
JD362994 - Sequence 344018 from Patent EP1572962.
JD426898 - Sequence 407922 from Patent EP1572962.
JD198787 - Sequence 179811 from Patent EP1572962.
JD023295 - Sequence 4319 from Patent EP1572962.
JD033296 - Sequence 14320 from Patent EP1572962.
JD021435 - Sequence 2459 from Patent EP1572962.
DQ599371 - Homo sapiens piRNA piR-37437, complete sequence.
DQ571384 - Homo sapiens piRNA piR-31496, complete sequence.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
ARGININE-SYN4-PWY - ornithine de novo biosynthesis
PROSYN-PWY - L-proline biosynthesis

Reactome (by CSHL, EBI, and GO)

Protein P54886 (Reactome details) participates in the following event(s):

R-HSA-508040 glutamate + ATP + NADPH + H+ => L-glutamate gamma-semialdehyde + NADP+ + ADP + orthophosphate [P5CS]
R-HSA-70614 Amino acid synthesis and interconversion (transamination)
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism
R-HSA-508040 glutamate + ATP + NADPH + H+ => L-glutamate gamma-semialdehyde + NADP+ + ADP + orthophosphate [P5CS]
R-HSA-70614 Amino acid synthesis and interconversion (transamination)
R-HSA-71291 Metabolism of nitrogenous molecules
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: B2R5Q4, B7Z350, B7Z5X8, B7ZLP1, D3DR44, ENST00000371224.1, ENST00000371224.2, ENST00000371224.3, ENST00000371224.4, ENST00000371224.5, ENST00000371224.6, GSAS, NM_002860, O95952, P54886, P5CS, P5CS_HUMAN, PYCS, Q3KQU2, Q5T566, Q5T567, Q9UM72, uc318izr.1, uc318izr.2
UCSC ID: ENST00000371224.7_13
RefSeq Accession: NM_002860.4
Protein: P54886 (aka P5CS_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene ALDH18A1:
hsp (Hereditary Spastic Paraplegia Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.