Human Gene ANKRD28 (ENST00000683139.1_5) from GENCODE V47lift37
  Description: ankyrin repeat domain 28, transcript variant 14 (from RefSeq NR_146112.2)
Gencode Transcript: ENST00000683139.1_5
Gencode Gene: ENSG00000206560.12_11
Transcript (Including UTRs)
   Position: hg19 chr3:15,708,743-15,839,486 Size: 130,744 Total Exon Count: 28 Strand: -
Coding Region
   Position: hg19 chr3:15,711,777-15,838,028 Size: 126,252 Coding Exon Count: 28 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:15,708,743-15,839,486)mRNA (may differ from genome)Protein (1083 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: ANR28_HUMAN
DESCRIPTION: RecName: Full=Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A; Short=PP6-ARS-A; Short=Serine/threonine-protein phosphatase 6 regulatory subunit ARS-A; AltName: Full=Ankyrin repeat domain-containing protein 28; AltName: Full=Phosphatase interactor targeting protein hnRNP K; Short=PITK;
FUNCTION: Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates. Involved in the PP6-mediated dephosphorylation of NFKBIE opposing its degradation in response to TNF-alpha. Selectively inhibits the phosphatase activity of PPP1C. Targets PPP1C to modulate HNRPK phosphorylation.
SUBUNIT: Protein phosphatase 6 (PP6) holoenzyme is proposed to be a heterotrimeric complex formed by the catalytic subunit, a SAPS domain-containing subunit (PP6R) and an ankyrin repeat-domain containing regulatory subunit (ARS). Interacts with PPP1C and HNRPK. Interacts with PPP6C, PPP6R1 and PPP6R3.
INTERACTION: O00743:PPP6C; NbExp=3; IntAct=EBI-359567, EBI-359751; Q9UPN7:PPP6R1; NbExp=4; IntAct=EBI-359567, EBI-359745; Q5H9R7:PPP6R3; NbExp=3; IntAct=EBI-359567, EBI-355498; Q9H2K2:TNKS2; NbExp=3; IntAct=EBI-359567, EBI-4398527;
SUBCELLULAR LOCATION: Nucleus, nucleoplasm. Note=Seems to be excluded from nucleoli.
SIMILARITY: Contains 27 ANK repeats.
SEQUENCE CAUTION: Sequence=AAQ72374.1; Type=Frameshift; Positions=408; Sequence=BAA20833.2; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=BAC86737.1; Type=Miscellaneous discrepancy; Note=Intron retention;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: ANKRD28
Diseases sorted by gene-association score: urethra adenocarcinoma (2), urethra clear cell adenocarcinoma (2), urethral benign neoplasm (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -360.801458-0.247 Picture PostScript Text
3' UTR -751.603034-0.248 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002110 - Ankyrin_rpt
IPR020683 - Ankyrin_rpt-contain_dom

Pfam Domains:
PF00023 - Ankyrin repeat
PF12796 - Ankyrin repeats (3 copies)
PF13606 - Ankyrin repeat
PF13637 - Ankyrin repeats (many copies)
PF13857 - Ankyrin repeats (many copies)

SCOP Domains:
140860 - Pseudo ankyrin repeat-like
51984 - MurCD N-terminal domain
48403 - Ankyrin repeat

ModBase Predicted Comparative 3D Structure on O15084
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0048208 COPII vesicle coating

Cellular Component:
GO:0000139 Golgi membrane
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  LF384975 - JP 2014500723-A/192478: Polycomb-Associated Non-Coding RNAs.
AB002377 - Homo sapiens KIAA0379 mRNA for KIAA0379 protein.
AY367056 - Homo sapiens KIAA0379-like protein mRNA, complete cds.
AK293770 - Homo sapiens cDNA FLJ58725 complete cds, highly similar to Ankyrin repeat domain-containing protein 28.
AB383866 - Synthetic construct DNA, clone: pF1KSDA0379, Homo sapiens ANKRD28 gene for ankyrin repeat domain-containing protein 28, complete cds, without stop codon, in Flexi system.
BC166612 - Synthetic construct Homo sapiens clone IMAGE:100066338, MGC:195475 ankyrin repeat domain 28 (ANKRD28) mRNA, encodes complete protein.
AK295813 - Homo sapiens cDNA FLJ54784 complete cds, highly similar to Ankyrin repeat domain-containing protein 28.
AK126888 - Homo sapiens cDNA FLJ44940 fis, clone BRAMY4000915, weakly similar to Ankyrin 1.
BC113868 - Homo sapiens ankyrin repeat domain 28, mRNA (cDNA clone IMAGE:40034601), partial cds.
BC106948 - Homo sapiens ankyrin repeat domain 28, mRNA (cDNA clone IMAGE:40034599), partial cds.
BC114476 - Homo sapiens ankyrin repeat domain 28, mRNA (cDNA clone IMAGE:40034600), partial cds.
MA620552 - JP 2018138019-A/192478: Polycomb-Associated Non-Coding RNAs.
LF333785 - JP 2014500723-A/141288: Polycomb-Associated Non-Coding RNAs.
LF333786 - JP 2014500723-A/141289: Polycomb-Associated Non-Coding RNAs.
JD467660 - Sequence 448684 from Patent EP1572962.
JD236667 - Sequence 217691 from Patent EP1572962.
JD045832 - Sequence 26856 from Patent EP1572962.
LF333787 - JP 2014500723-A/141290: Polycomb-Associated Non-Coding RNAs.
JD110151 - Sequence 91175 from Patent EP1572962.
JD428762 - Sequence 409786 from Patent EP1572962.
JD272252 - Sequence 253276 from Patent EP1572962.
JD428679 - Sequence 409703 from Patent EP1572962.
JD467628 - Sequence 448652 from Patent EP1572962.
JD342563 - Sequence 323587 from Patent EP1572962.
JD194516 - Sequence 175540 from Patent EP1572962.
JD548674 - Sequence 529698 from Patent EP1572962.
JD490953 - Sequence 471977 from Patent EP1572962.
JD063455 - Sequence 44479 from Patent EP1572962.
JD273828 - Sequence 254852 from Patent EP1572962.
JD110758 - Sequence 91782 from Patent EP1572962.
JD083577 - Sequence 64601 from Patent EP1572962.
JD225749 - Sequence 206773 from Patent EP1572962.
JD258198 - Sequence 239222 from Patent EP1572962.
BC064513 - Homo sapiens ankyrin repeat domain 28, mRNA (cDNA clone IMAGE:3687675), with apparent retained intron.
BC080522 - Homo sapiens cDNA clone IMAGE:3542720.
LF333788 - JP 2014500723-A/141291: Polycomb-Associated Non-Coding RNAs.
JD038281 - Sequence 19305 from Patent EP1572962.
LF333789 - JP 2014500723-A/141292: Polycomb-Associated Non-Coding RNAs.
JD187495 - Sequence 168519 from Patent EP1572962.
JD535595 - Sequence 516619 from Patent EP1572962.
DQ600880 - Homo sapiens piRNA piR-38946, complete sequence.
JD270253 - Sequence 251277 from Patent EP1572962.
LF333790 - JP 2014500723-A/141293: Polycomb-Associated Non-Coding RNAs.
AK299540 - Homo sapiens cDNA FLJ57080 complete cds, highly similar to Ankyrin repeat domain-containing protein 28.
JD279853 - Sequence 260877 from Patent EP1572962.
LF333791 - JP 2014500723-A/141294: Polycomb-Associated Non-Coding RNAs.
LF333792 - JP 2014500723-A/141295: Polycomb-Associated Non-Coding RNAs.
LF333794 - JP 2014500723-A/141297: Polycomb-Associated Non-Coding RNAs.
LF333795 - JP 2014500723-A/141298: Polycomb-Associated Non-Coding RNAs.
LF333797 - JP 2014500723-A/141300: Polycomb-Associated Non-Coding RNAs.
LF333798 - JP 2014500723-A/141301: Polycomb-Associated Non-Coding RNAs.
MA569362 - JP 2018138019-A/141288: Polycomb-Associated Non-Coding RNAs.
MA569363 - JP 2018138019-A/141289: Polycomb-Associated Non-Coding RNAs.
MA569364 - JP 2018138019-A/141290: Polycomb-Associated Non-Coding RNAs.
MA569365 - JP 2018138019-A/141291: Polycomb-Associated Non-Coding RNAs.
MA569366 - JP 2018138019-A/141292: Polycomb-Associated Non-Coding RNAs.
MA569367 - JP 2018138019-A/141293: Polycomb-Associated Non-Coding RNAs.
MA569368 - JP 2018138019-A/141294: Polycomb-Associated Non-Coding RNAs.
MA569369 - JP 2018138019-A/141295: Polycomb-Associated Non-Coding RNAs.
MA569371 - JP 2018138019-A/141297: Polycomb-Associated Non-Coding RNAs.
MA569372 - JP 2018138019-A/141298: Polycomb-Associated Non-Coding RNAs.
MA569374 - JP 2018138019-A/141300: Polycomb-Associated Non-Coding RNAs.
MA569375 - JP 2018138019-A/141301: Polycomb-Associated Non-Coding RNAs.
LF333803 - JP 2014500723-A/141306: Polycomb-Associated Non-Coding RNAs.
LF333805 - JP 2014500723-A/141308: Polycomb-Associated Non-Coding RNAs.
JD249488 - Sequence 230512 from Patent EP1572962.
BC035170 - Homo sapiens cDNA clone IMAGE:5265791.
BC048975 - Homo sapiens cDNA clone IMAGE:4825654.
LF333808 - JP 2014500723-A/141311: Polycomb-Associated Non-Coding RNAs.
LF333815 - JP 2014500723-A/141318: Polycomb-Associated Non-Coding RNAs.
LF333820 - JP 2014500723-A/141323: Polycomb-Associated Non-Coding RNAs.
LF333821 - JP 2014500723-A/141324: Polycomb-Associated Non-Coding RNAs.
LF333822 - JP 2014500723-A/141325: Polycomb-Associated Non-Coding RNAs.
MA569380 - JP 2018138019-A/141306: Polycomb-Associated Non-Coding RNAs.
MA569382 - JP 2018138019-A/141308: Polycomb-Associated Non-Coding RNAs.
MA569385 - JP 2018138019-A/141311: Polycomb-Associated Non-Coding RNAs.
MA569392 - JP 2018138019-A/141318: Polycomb-Associated Non-Coding RNAs.
MA569397 - JP 2018138019-A/141323: Polycomb-Associated Non-Coding RNAs.
MA569398 - JP 2018138019-A/141324: Polycomb-Associated Non-Coding RNAs.
MA569399 - JP 2018138019-A/141325: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O15084 (Reactome details) participates in the following event(s):

R-HSA-5694421 PP6 dephosphorylates SEC24
R-HSA-204005 COPII-mediated vesicle transport
R-HSA-199977 ER to Golgi Anterograde Transport
R-HSA-199991 Membrane Trafficking
R-HSA-948021 Transport to the Golgi and subsequent modification
R-HSA-5653656 Vesicle-mediated transport
R-HSA-446203 Asparagine N-linked glycosylation
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: ANR28_HUMAN, B4DES5, KIAA0379, NR_146112, O15084, Q1WWL4, Q29RW6, Q3B857, Q6ULS0, Q6ZT57, uc330kyn.1, uc330kyn.2
UCSC ID: ENST00000683139.1_5
RefSeq Accession: NM_001349278.2
Protein: O15084 (aka ANR28_HUMAN or AN28_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.