Human Gene AS3MT (ENST00000369880.8_4) from GENCODE V47lift37
  Description: arsenite methyltransferase (from RefSeq NM_020682.4)
Gencode Transcript: ENST00000369880.8_4
Gencode Gene: ENSG00000214435.9_9
Transcript (Including UTRs)
   Position: hg19 chr10:104,629,227-104,661,656 Size: 32,430 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr10:104,629,350-104,660,457 Size: 31,108 Coding Exon Count: 11 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:104,629,227-104,661,656)mRNA (may differ from genome)Protein (375 aa)
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UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: AS3MT_HUMAN
DESCRIPTION: RecName: Full=Arsenite methyltransferase; EC=2.1.1.137; AltName: Full=Methylarsonite methyltransferase; AltName: Full=S-adenosyl-L-methionine:arsenic(III) methyltransferase;
FUNCTION: Catalyzes the transfer of a methyl group from AdoMet to trivalent arsenicals producing methylated and dimethylated arsenicals. It methylates arsenite to form methylarsonate, Me- AsO(3)H(2), which is reduced by methylarsonate reductase to methylarsonite, Me-As(OH)2. Methylarsonite is also a substrate and it is converted into the much less toxic compound dimethylarsinate (cacodylate), Me(2)As(O)-OH (By similarity).
CATALYTIC ACTIVITY: S-adenosyl-L-methionine + arsenite = S- adenosyl-L-homocysteine + methylarsonate.
CATALYTIC ACTIVITY: S-adenosyl-L-methionine + methylarsonite = S- adenosyl-L-homocysteine + dimethylarsinate.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=4.6 uM for sodium arsenite; KM=11.8 uM for AdoMet;
SUBCELLULAR LOCATION: Cytoplasm (By similarity).
SIMILARITY: Belongs to the methyltransferase superfamily.
SEQUENCE CAUTION: Sequence=AAG09731.1; Type=Frameshift; Positions=333;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: AS3MT
Diseases sorted by gene-association score: griscelli syndrome, type 3 (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.35 RPKM in Adrenal Gland
Total median expression: 12.48 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -51.80123-0.421 Picture PostScript Text
3' UTR -583.601199-0.487 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026669 - Arsenite_MeTrfase

Pfam Domains:
PF01135 - Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
PF01209 - ubiE/COQ5 methyltransferase family
PF05148 - Hypothetical methyltransferase
PF08241 - Methyltransferase domain
PF08242 - Methyltransferase domain
PF13489 - Methyltransferase domain
PF13649 - Methyltransferase domain
PF13847 - Methyltransferase domain

SCOP Domains:
51735 - NAD(P)-binding Rossmann-fold domains
53335 - S-adenosyl-L-methionine-dependent methyltransferases

ModBase Predicted Comparative 3D Structure on Q9HBK9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0008168 methyltransferase activity
GO:0016740 transferase activity
GO:0030791 arsenite methyltransferase activity
GO:0030792 methylarsonite methyltransferase activity

Biological Process:
GO:0009404 toxin metabolic process
GO:0018872 arsonoacetate metabolic process
GO:0032259 methylation

Cellular Component:
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  BC040069 - Homo sapiens cDNA clone IMAGE:5217220, **** WARNING: chimeric clone ****.
AK057833 - Homo sapiens cDNA FLJ25104 fis, clone CBR01413, highly similar to Homo sapiens Cyt19 mRNA.
AK225972 - Homo sapiens mRNA for Arsenite methyltransferase variant, clone: FCC112G01.
JD180679 - Sequence 161703 from Patent EP1572962.
AF226730 - Homo sapiens Cyt19 mRNA, complete cds.
AK309737 - Homo sapiens cDNA, FLJ99778.
JD180679 - Sequence 161703 from Patent EP1572962.
BC119637 - Homo sapiens arsenic (+3 oxidation state) methyltransferase, mRNA (cDNA clone IMAGE:40115676), partial cds.
BC119638 - Homo sapiens arsenic (+3 oxidation state) methyltransferase, mRNA (cDNA clone IMAGE:40115677), partial cds.
JD180679 - Sequence 161703 from Patent EP1572962.
AB590972 - Synthetic construct DNA, clone: pFN21AE1856, Homo sapiens AS3MT gene for arsenic (+3 oxidation state) methyltransferase, without stop codon, in Flexi system.
BC160057 - Synthetic construct Homo sapiens clone IMAGE:100063993, MGC:193172 arsenic (+3 oxidation state) methyltransferase (AS3MT) mRNA, encodes complete protein.
JD421961 - Sequence 402985 from Patent EP1572962.
JD446439 - Sequence 427463 from Patent EP1572962.
JD341075 - Sequence 322099 from Patent EP1572962.
JD564754 - Sequence 545778 from Patent EP1572962.
JD553388 - Sequence 534412 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9HBK9 (Reactome details) participates in the following event(s):

R-HSA-5696213 AS3MT transfers CH3 from AdoMet to methylarsonite
R-HSA-5696220 AS3MT transfers CH3 from AdoMet to arsenite(3-)
R-HSA-156581 Methylation
R-HSA-156580 Phase II - Conjugation of compounds
R-HSA-211859 Biological oxidations
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: A6NP79, AS3MT_HUMAN, CYT19, ENST00000369880.1, ENST00000369880.2, ENST00000369880.3, ENST00000369880.4, ENST00000369880.5, ENST00000369880.6, ENST00000369880.7, NM_020682, Q0VDK3, Q0VDK4, Q5PZ02, Q9HBK9, uc318hxu.1, uc318hxu.2
UCSC ID: ENST00000369880.8_4
RefSeq Accession: NM_020682.4
Protein: Q9HBK9 (aka AS3MT_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.