Human Gene ATP11C (ENST00000682941.1_8) from GENCODE V47lift37

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Description: ATPase phospholipid transporting 11C, transcript variant 5 (from RefSeq NM_001353812.2)
Gencode Transcript: ENST00000682941.1_8
Gencode Gene: ENSG00000101974.15_17
Transcript (Including UTRs)
Position: hg19 chrX:138,808,507-139,015,212 Size: 206,706 Total Exon Count: 30 Strand: -
Coding Region
Position: hg19 chrX:138,813,813-139,014,201 Size: 200,389 Coding Exon Count: 29

Page Index	Sequence and Links	Primers	MalaCards	CTD	Gene Alleles
Microarray Expression	RNA Structure	Other Species	mRNA Descriptions	Other Names	Model Information
Methods

Data last updated at UCSC: 2024-08-22 23:36:26

Sequence and Links to Tools and Databases

Genomic Sequence (chrX:138,808,507-139,015,212)			mRNA (may differ from genome)		Protein (1129 aa)
Gene Sorter	Genome Browser	Other Species FASTA	VisiGene	Gene interactions	Table Schema
AlphaFold	BioGPS	Ensembl	Entrez Gene	ExonPrimer	GeneCards
HGNC	Malacards	MGI	OMIM	PubMed	UniProtKB
Wikipedia	BioGrid CRISPR DB

Primer design for this transcript

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3

MalaCards Disease Associations


	MalaCards Gene Search: ATP11C Diseases sorted by gene-association score: congenital hemolytic anemia (6)

Comparative Toxicogenomics Database (CTD)


	The following chemicals interact with this gene D000082 Acetaminophen C016403 2,4-dinitrotoluene C023514 2,6-dinitrotoluene C028451 3,4,3',4'-tetrachlorobiphenyl D016604 Aflatoxin B1 D000638 Amiodarone D001564 Benzo(a)pyrene D002509 Cephaloridine D004041 Dietary Fats D004052 Diethylnitrosamine more ... click here to view the complete list

Common Gene Haplotype Alleles


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Microarray Expression Data


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mRNA Secondary Structure of 3' and 5' UTRs

Region	Fold Energy	Bases	Energy/Base	Display As
5' UTR	-583.50	1011	-0.577	Picture	PostScript	Text
3' UTR	-582.20	2618	-0.222	Picture	PostScript	Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

Orthologous Genes in Other Species

Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.

Mouse	Rat	Zebrafish	D. melanogaster	C. elegans	S. cerevisiae
No ortholog	No ortholog	No ortholog	No ortholog	No ortholog	No ortholog
Gene Details	Gene Details
Gene Sorter	Gene Sorter
	RGD	Ensembl

Descriptions from all associated GenBank mRNAs


	BX648981 - Homo sapiens mRNA; cDNA DKFZp779E2420 (from clone DKFZp779E2420). AK093835 - Homo sapiens cDNA FLJ36516 fis, clone TRACH2001898. AK125476 - Homo sapiens cDNA FLJ43487 fis, clone OCBBF3004264, moderately similar to Mus musculus putative E1-E2 ATPase. AK125474 - Homo sapiens cDNA FLJ43485 fis, clone OCBBF3003320, moderately similar to Potential phospholipid-transporting ATPase IS (EC 3.6.3.13). AJ580093 - Homo sapiens mRNA for ATPase, Class VI, type 11C (ATP11C gene). AJ580094 - Homo sapiens mRNA for ATPase, Class VI, type 11C (ATP11C gene), alternative splice product. BX648320 - Homo sapiens mRNA; cDNA DKFZp686G09145 (from clone DKFZp686G09145). D16467 - Homo sapiens mRNA, Xq terminal portion. AK091552 - Homo sapiens cDNA FLJ34233 fis, clone FCBBF3026048, highly similar to Mus musculus putative E1-E2 ATPase mRNA. AX747055 - Sequence 580 from Patent EP1308459. JD059620 - Sequence 40644 from Patent EP1572962. JD265371 - Sequence 246395 from Patent EP1572962. JD553099 - Sequence 534123 from Patent EP1572962. JD296418 - Sequence 277442 from Patent EP1572962. JD087318 - Sequence 68342 from Patent EP1572962. JD352211 - Sequence 333235 from Patent EP1572962. JD566569 - Sequence 547593 from Patent EP1572962. JD554312 - Sequence 535336 from Patent EP1572962. JD291551 - Sequence 272575 from Patent EP1572962. JD359504 - Sequence 340528 from Patent EP1572962. JD060511 - Sequence 41535 from Patent EP1572962. BC132728 - Homo sapiens ATPase, class VI, type 11C, mRNA (cDNA clone IMAGE:40146750). BC132730 - Homo sapiens ATPase, class VI, type 11C, mRNA (cDNA clone IMAGE:40146752). JD213979 - Sequence 195003 from Patent EP1572962. JD298881 - Sequence 279905 from Patent EP1572962. JD300642 - Sequence 281666 from Patent EP1572962. JD504129 - Sequence 485153 from Patent EP1572962. JD040374 - Sequence 21398 from Patent EP1572962. JD334988 - Sequence 316012 from Patent EP1572962. JD363942 - Sequence 344966 from Patent EP1572962. JD313623 - Sequence 294647 from Patent EP1572962. JD194193 - Sequence 175217 from Patent EP1572962. AK131262 - Homo sapiens cDNA FLJ16194 fis, clone BRTHA2018443, moderately similar to POTENTIAL PHOSPHOLIPID-TRANSPORTING ATPASE IS (EC 3.6.1.-). AK125986 - Homo sapiens cDNA FLJ43998 fis, clone TESTI4021478, moderately similar to Potential phospholipid-transporting ATPase IS (EC 3.6.3.13). JD182312 - Sequence 163336 from Patent EP1572962. BC172372 - Synthetic construct Homo sapiens clone IMAGE:100069066, MGC:199077 ATPase, class VI, type 11C (ATP11C) mRNA, encodes complete protein.

Other Names for This Gene


	Alternate Gene Symbols: A0A804HIW2, A0A804HIW2_HUMAN, ATP11C , NM_001353812, uc330kqx.1, uc330kqx.2 UCSC ID: ENST00000682941.1_8 RefSeq Accession: NM_001353812.2

Gene Model Information


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Methods, Credits, and Use Restrictions


	Click here for details on how this gene model was made and data restrictions if any.