Human Gene ANAPC15 (ENST00000227618.9_10) from GENCODE V47lift37
  Description: anaphase promoting complex subunit 15, transcript variant 47 (from RefSeq NR_171685.1)
Gencode Transcript: ENST00000227618.9_10
Gencode Gene: ENSG00000110200.9_15
Transcript (Including UTRs)
   Position: hg19 chr11:71,820,633-71,823,741 Size: 3,109 Total Exon Count: 6 Strand: -
Coding Region
   Position: hg19 chr11:71,820,927-71,822,322 Size: 1,396 Coding Exon Count: 4 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:71,820,633-71,823,741)mRNA (may differ from genome)Protein (121 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblExonPrimerGeneCardsHGNCMGI
PubMedReactomeUniProtKB

-  Comments and Description Text from UniProtKB
  ID: APC15_HUMAN
DESCRIPTION: RecName: Full=Anaphase-promoting complex subunit 15; Short=APC15;
FUNCTION: Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. In the complex, plays a role in the release of the mitotic checkpoint complex (MCC) from the APC/C: not required for APC/C activity itself, but promotes the turnover of CDC20 and MCC on the APC/C, thereby participating to the responsiveness of the spindle assembly checkpoint. Also required for degradation of CDC20.
SUBUNIT: The APC/C is composed of at least 12 subunits.
SIMILARITY: Belongs to the APC15 family.
SEQUENCE CAUTION: Sequence=EAW74842.1; Type=Erroneous gene model prediction;

-  Primer design for this transcript
 

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Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.13 RPKM in Testis
Total median expression: 221.63 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -42.00141-0.298 Picture PostScript Text
3' UTR -92.10294-0.313 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026182 - ANAPC15

Pfam Domains:
PF15243 - Anaphase-promoting complex subunit 15

ModBase Predicted Comparative 3D Structure on P60006
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0007049 cell cycle
GO:0031145 anaphase-promoting complex-dependent catabolic process
GO:0051301 cell division
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint

Cellular Component:
GO:0005622 intracellular
GO:0005654 nucleoplasm
GO:0005680 anaphase-promoting complex
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AK311146 - Homo sapiens cDNA, FLJ18188.
AK222622 - Homo sapiens mRNA, hypothetical protein LOC25906 variant, clone: CAS11095.
BC005156 - Homo sapiens chromosome 11 open reading frame 51, mRNA (cDNA clone MGC:4245 IMAGE:2964612), complete cds.
AF077206 - Homo sapiens HSPC020 mRNA, complete cds.
BC005393 - Homo sapiens chromosome 11 open reading frame 51, mRNA (cDNA clone MGC:12527 IMAGE:4051407), complete cds.
AL080071 - Homo sapiens mRNA; cDNA DKFZp564M082 (from clone DKFZp564M082).
JD253116 - Sequence 234140 from Patent EP1572962.
JD084800 - Sequence 65824 from Patent EP1572962.
JD565551 - Sequence 546575 from Patent EP1572962.
JD019381 - Sequence 405 from Patent EP1572962.
JD154717 - Sequence 135741 from Patent EP1572962.
JD230636 - Sequence 211660 from Patent EP1572962.
JD097965 - Sequence 78989 from Patent EP1572962.
JD134962 - Sequence 115986 from Patent EP1572962.
JD095142 - Sequence 76166 from Patent EP1572962.
JD054564 - Sequence 35588 from Patent EP1572962.
JD107049 - Sequence 88073 from Patent EP1572962.
EU831644 - Synthetic construct Homo sapiens clone HAIB:100066673; DKFZo007F0619 chromosome 11 open reading frame 51 protein (C11orf51) gene, encodes complete protein.
HQ447908 - Synthetic construct Homo sapiens clone IMAGE:100071264; CCSB005557_03 chromosome 11 open reading frame 51 (C11orf51) gene, encodes complete protein.
KJ893488 - Synthetic construct Homo sapiens clone ccsbBroadEn_02882 C11orf51 gene, encodes complete protein.
KJ898569 - Synthetic construct Homo sapiens clone ccsbBroadEn_07963 C11orf51 gene, encodes complete protein.
EU831728 - Synthetic construct Homo sapiens clone HAIB:100066757; DKFZo003F0620 chromosome 11 open reading frame 51 protein (C11orf51) gene, encodes complete protein.
CU675155 - Synthetic construct Homo sapiens gateway clone IMAGE:100018513 5' read C11orf51 mRNA.
JD442647 - Sequence 423671 from Patent EP1572962.
JD040085 - Sequence 21109 from Patent EP1572962.
JD316223 - Sequence 297247 from Patent EP1572962.
JD166343 - Sequence 147367 from Patent EP1572962.
JD409160 - Sequence 390184 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P60006 (Reactome details) participates in the following event(s):

R-HSA-174119 Free APC/C phosphorylated by Plk1
R-HSA-174132 Free APC/C phosphorylated by Cyclin B:Cdc2
R-HSA-174139 Dissociation of phospho-Cdh1 from the APC/C complex
R-HSA-141423 Binding of the MCC complex to the APC/C complex
R-HSA-174070 Association of Cdh1 with the APC/C
R-HSA-174224 Dissociation of Cdc20 from APC/C complex
R-HSA-174057 Multiubiquitination of APC/C-associated Cdh1
R-HSA-188371 Association of Cyclin A:Cdk2 with Cdh1
R-HSA-3788708 CDKN1A (p21) prevents association of Cyclin A:Cdk2 with Cdh1
R-HSA-3788725 Cdh1:APC/C complex binds EHMT1:EHMT2
R-HSA-174171 Association of Cyclin A with the APC/C
R-HSA-174238 Activation of APC/C:Cdc20 by dissociation of Cdc20:phospho-APC/C from Cdc20:phospho-APC/C:Mad2:Bub3:BubR1
R-HSA-179410 Association of Nek2A with MCC:APC/C
R-HSA-174120 Association of Cyclin B:Cdc2 with Cdc20:APC/C complex
R-HSA-174121 Association of Securin with Cdc20:APC/C complex
R-HSA-174088 Association of cell cycle proteins with the APC/C:Cdh1 complex
R-HSA-174079 Phosphorylation of Cdh1 by Cyclin A:Cdk2
R-HSA-3788705 CDKN1A (p21) prevents phosphorylation of Cdh1 by Cyclin A:Cdk2
R-HSA-3788724 Cdh1:APC/C ubiquitinates EHMT1 and EHMT2
R-HSA-174104 Ubiquitination of Cyclin A by APC/C:Cdc20 complex
R-HSA-179417 Multiubiquitination of Nek2A
R-HSA-174227 Ubiquitination of Cyclin B by phospho-APC/C:Cdc20 complex
R-HSA-174144 Ubiquitination of Securin by phospho-APC/C:Cdc20 complex
R-HSA-174195 Ubiquitination of cell cycle proteins targeted by the APC/C:Cdh1complex
R-HSA-69015 Cytoplasmic phosphorylated Cdc6 is ubiquitinated by the anaphase-promoting complex
R-HSA-176412 Phosphorylation of the APC/C
R-HSA-174084 Autodegradation of Cdh1 by Cdh1:APC/C
R-HSA-176408 Regulation of APC/C activators between G1/S and early anaphase
R-HSA-141430 Inactivation of APC/C via direct inhibition of the APC/C complex
R-HSA-176407 Conversion from APC/C:Cdc20 to APC/C:Cdh1 in late anaphase
R-HSA-176814 Activation of APC/C and APC/C:Cdc20 mediated degradation of mitotic proteins
R-HSA-2559582 Senescence-Associated Secretory Phenotype (SASP)
R-HSA-174143 APC/C-mediated degradation of cell cycle proteins
R-HSA-174184 Cdc20:Phospho-APC/C mediated degradation of Cyclin A
R-HSA-176409 APC/C:Cdc20 mediated degradation of mitotic proteins
R-HSA-179409 APC-Cdc20 mediated degradation of Nek2A
R-HSA-174048 APC/C:Cdc20 mediated degradation of Cyclin B
R-HSA-174154 APC/C:Cdc20 mediated degradation of Securin
R-HSA-2467813 Separation of Sister Chromatids
R-HSA-174178 APC/C:Cdh1 mediated degradation of Cdc20 and other APC/C:Cdh1 targeted proteins in late mitosis/early G1
R-HSA-141405 Inhibition of the proteolytic activity of APC/C required for the onset of anaphase by mitotic spindle checkpoint components
R-HSA-2559583 Cellular Senescence
R-HSA-453276 Regulation of mitotic cell cycle
R-HSA-179419 APC:Cdc20 mediated degradation of cell cycle proteins prior to satisfation of the cell cycle checkpoint
R-HSA-68882 Mitotic Anaphase
R-HSA-69017 CDK-mediated phosphorylation and removal of Cdc6
R-HSA-69618 Mitotic Spindle Checkpoint
R-HSA-2262752 Cellular responses to stress
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-2555396 Mitotic Metaphase and Anaphase
R-HSA-69052 Switching of origins to a post-replicative state
R-HSA-69620 Cell Cycle Checkpoints
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-1640170 Cell Cycle
R-HSA-68886 M Phase
R-HSA-69239 Synthesis of DNA
R-HSA-69242 S Phase
R-HSA-69306 DNA Replication

-  Other Names for This Gene
  Alternate Gene Symbols: APC15_HUMAN, C11orf51, ENST00000227618.1, ENST00000227618.2, ENST00000227618.3, ENST00000227618.4, ENST00000227618.5, ENST00000227618.6, ENST00000227618.7, ENST00000227618.8, G3V1Q3, HSPC020, NR_171685, P60006, Q9CXK2, Q9Y269, uc317dmz.1, uc317dmz.2
UCSC ID: ENST00000227618.9_10
RefSeq Accession: NM_014042.3
Protein: P60006 (aka APC15_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
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