Human Gene CCKBR (ENST00000334619.7_8) from GENCODE V47lift37
  Description: cholecystokinin B receptor, transcript variant 1 (from RefSeq NM_176875.4)
Gencode Transcript: ENST00000334619.7_8
Gencode Gene: ENSG00000110148.10_10
Transcript (Including UTRs)
   Position: hg19 chr11:6,281,068-6,293,357 Size: 12,290 Total Exon Count: 5 Strand: +
Coding Region
   Position: hg19 chr11:6,281,159-6,292,773 Size: 11,615 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr11:6,281,068-6,293,357)mRNA (may differ from genome)Protein (447 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCHuman Cortex Gene ExpressionMalacardsMGIOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GASR_HUMAN
DESCRIPTION: RecName: Full=Gastrin/cholecystokinin type B receptor; Short=CCK-B receptor; Short=CCK-BR; AltName: Full=Cholecystokinin-2 receptor; Short=CCK2-R;
FUNCTION: Receptor for gastrin and cholecystokinin. The CKK-B receptors occur throughout the central nervous system where they modulate anxiety, analgesia, arousal, and neuroleptic activity. This receptor mediates its action by association with G proteins that activate a phosphatidylinositol-calcium second messenger system.
FUNCTION: Isoform 2 is constitutively activated and may regulate cancer cell proliferation via a gastrin-independent mechanism.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Isoform 1 is expressed in brain, pancreas, stomach, the colon cancer cell line LoVo and the T-lymphoblastoma Jurkat, but not in heart, placenta, liver, lung, skeletal muscle, kidney or the stomach cancer cell line AGS. Expressed at high levels in the small cell lung cancer cell line NCI-H510, at lower levels in NCI-H345, NCI-H69 and GLC-28 cell lines, not expressed in GLC-19 cell line. Within the stomach, expressed at high levels in the mucosa of the gastric fundus and at low levels in the antrum and duodenum. Isoform 2 is present in pancreatic cancer cells and colorectal cancer cells, but not in normal pancreas or colonic mucosa. Isoform 3 is expressed in brain, pancreas, stomach, the stomach cancer cell line AGS and the colon cancer cell line LoVo.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.
WEB RESOURCE: Name=Wikipedia; Note=Cholecystokinin receptor entry; URL="http://en.wikipedia.org/wiki/Cholecystokinin_receptor";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: CCKBR
Diseases sorted by gene-association score: panic disorder (25), pancreatic cancer (17), stomach cancer (14), gastric adenocarcinoma (9), agoraphobia (7), medullary thyroid carcinoma, familial (7), colorectal cancer (6), fibrolamellar carcinoma (6), pancreatic gastrinoma (6), gastric cancer, somatic (5), gastritis (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 21.42 RPKM in Stomach
Total median expression: 84.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -45.8091-0.503 Picture PostScript Text
3' UTR -154.00584-0.264 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR009126 - Cholcskin_rcpt
IPR000314 - Gastrin_rcpt
IPR017452 - GPCR_Rhodpsn_supfam

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)
PF13853 - Olfactory receptor

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1L4T - NMR


ModBase Predicted Comparative 3D Structure on P32239
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0004951 cholecystokinin receptor activity
GO:0005515 protein binding
GO:0015054 gastrin receptor activity
GO:0017046 peptide hormone binding
GO:0031741 type B gastrin/cholecystokinin receptor binding
GO:0046935 1-phosphatidylinositol-3-kinase regulator activity

Biological Process:
GO:0001696 gastric acid secretion
GO:0007165 signal transduction
GO:0007166 cell surface receptor signaling pathway
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007200 phospholipase C-activating G-protein coupled receptor signaling pathway
GO:0007204 positive regulation of cytosolic calcium ion concentration
GO:0008283 cell proliferation
GO:0008284 positive regulation of cell proliferation
GO:0038188 cholecystokinin signaling pathway
GO:0043551 regulation of phosphatidylinositol 3-kinase activity
GO:0048565 digestive tract development
GO:0048732 gland development

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  D13305 - Homo sapiens mRNA for brain cholecystokinin receptor.
E07278 - cDNA encoding human cholecystokinin(CCK) receptor.
S70057 - Homo sapiens cholecystokinin B receptor mRNA, complete cds.
L07746 - Human cholecystokinin B receptor (CCK-B) mRNA, complete cds.
AK292064 - Homo sapiens cDNA FLJ77169 complete cds, highly similar to Homo sapiens cholecystokinin B receptor (CCKBR), mRNA.
AK226020 - Homo sapiens mRNA for cholecystokinin B receptor variant, clone: FCC106E01.
BC000740 - Homo sapiens cholecystokinin B receptor, mRNA (cDNA clone MGC:2199 IMAGE:3504160), complete cds.
AK314266 - Homo sapiens cDNA, FLJ95016.
AB527993 - Synthetic construct DNA, clone: pF1KE0638, Homo sapiens CCKBR gene for cholecystokinin B receptor, without stop codon, in Flexi system.
AF239668 - Homo sapiens CCK-B/gastrin receptor mRNA, complete cds; alternatively spliced.
DQ890577 - Synthetic construct clone IMAGE:100003207; FLH164088.01X; RZPDo839C07162D cholecystokinin B receptor (CCKBR) gene, encodes complete protein.
DQ893737 - Synthetic construct Homo sapiens clone IMAGE:100008197; FLH164084.01L; RZPDo839C07161D cholecystokinin B receptor (CCKBR) gene, encodes complete protein.
E07873 - cDNA encoding cholecystokinin B/gastrin receptor.
KJ896551 - Synthetic construct Homo sapiens clone ccsbBroadEn_05945 CCKBR gene, encodes complete protein.
KR709789 - Synthetic construct Homo sapiens clone CCSBHm_00006083 CCKBR (CCKBR) mRNA, encodes complete protein.
KR709790 - Synthetic construct Homo sapiens clone CCSBHm_00006084 CCKBR (CCKBR) mRNA, encodes complete protein.
BT006789 - Homo sapiens cholecystokinin B receptor mRNA, complete cds.
AF441129 - Homo sapiens cholecystokinin-C receptor (CCKBR) mRNA, complete cds, alternatively spliced.
AY029770 - Homo sapiens CCK-B/gastrin receptor variant mRNA, complete cds, alternatively spliced.
AY322551 - Homo sapiens cholecystokinin B receptor mRNA, complete cds.
E09599 - cDNA encoding cholecystokinin-B gastrin receptor.
E10411 - cDNA encoding a cholecytokinin-B/gastrin receptor.
L08112 - Human brain cholecystokinin-B/gastrin receptor mRNA, complete cds.
L04473 - Human cholecystokinin receptor mRNA, complete cds.
E10612 - Human cDNA encoding a cholecystokinin-B/gastrin receptor.
LF212136 - JP 2014500723-A/19639: Polycomb-Associated Non-Coding RNAs.
LF213096 - JP 2014500723-A/20599: Polycomb-Associated Non-Coding RNAs.
JD442478 - Sequence 423502 from Patent EP1572962.
JD540594 - Sequence 521618 from Patent EP1572962.
JD485538 - Sequence 466562 from Patent EP1572962.
JD456140 - Sequence 437164 from Patent EP1572962.
Y13464 - Homo sapiens mRNA for cholecystokinin B receptor.
S76072 - CCK-B=CCK-B gastrin receptor isoform {alternatively spliced} [human, stomach, mRNA, 240 nt].
MA447713 - JP 2018138019-A/19639: Polycomb-Associated Non-Coding RNAs.
MA448673 - JP 2018138019-A/20599: Polycomb-Associated Non-Coding RNAs.
DQ335648 - Homo sapiens cholecystokinin B receptor splice variant long isoform (CCKBR) mRNA, partial cds.
DQ335649 - Homo sapiens cholecystokinin B receptor splice variant hip/hop1 (CCKBR) mRNA, partial cds.
DQ335650 - Homo sapiens cholecystokinin B receptor splice variant hip/hop2 (CCKBR) mRNA, partial cds.
DQ335651 - Homo sapiens cholecystokinin B receptor splice variant hip/hop3 (CCKBR) mRNA, partial cds.
JD067504 - Sequence 48528 from Patent EP1572962.
JD225007 - Sequence 206031 from Patent EP1572962.
JD503619 - Sequence 484643 from Patent EP1572962.
JD429219 - Sequence 410243 from Patent EP1572962.
JD322393 - Sequence 303417 from Patent EP1572962.
JD043766 - Sequence 24790 from Patent EP1572962.
JD063327 - Sequence 44351 from Patent EP1572962.
JD374810 - Sequence 355834 from Patent EP1572962.
JD276139 - Sequence 257163 from Patent EP1572962.
JD419922 - Sequence 400946 from Patent EP1572962.
JD185589 - Sequence 166613 from Patent EP1572962.
JD509002 - Sequence 490026 from Patent EP1572962.
JD554513 - Sequence 535537 from Patent EP1572962.
JD108148 - Sequence 89172 from Patent EP1572962.
JD526013 - Sequence 507037 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein P32239 (Reactome details) participates in the following event(s):

R-HSA-870269 Gastrin binds to CCK-B receptor
R-HSA-388529 Cholecystokinin receptors bind cholecystokinin
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-881907 Gastrin-CREB signalling pathway via PKC and MAPK
R-HSA-375276 Peptide ligand-binding receptors
R-HSA-416476 G alpha (q) signalling events
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A8K7P9, CCKBR , CCKRB, ENST00000334619.1, ENST00000334619.2, ENST00000334619.3, ENST00000334619.4, ENST00000334619.5, ENST00000334619.6, GASR_HUMAN, NM_176875, O75824, P32239, Q16144, Q92492, Q96LC6, Q9NYK7, Q9UBV1, uc317uan.1, uc317uan.2
UCSC ID: ENST00000334619.7_8
RefSeq Accession: NM_176875.4
Protein: P32239 (aka GASR_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.