Human Gene CEBPG (ENST00000284000.9_4) from GENCODE V47lift37
  Description: CCAAT enhancer binding protein gamma, transcript variant 1 (from RefSeq NM_001806.4)
Gencode Transcript: ENST00000284000.9_4
Gencode Gene: ENSG00000153879.9_8
Transcript (Including UTRs)
   Position: hg19 chr19:33,864,615-33,873,592 Size: 8,978 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr19:33,870,146-33,870,598 Size: 453 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr19:33,864,615-33,873,592)mRNA (may differ from genome)Protein (150 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CEBPG_HUMAN
DESCRIPTION: RecName: Full=CCAAT/enhancer-binding protein gamma; Short=C/EBP gamma;
FUNCTION: Transcription factor that binds to the enhancer element PRE-I (positive regulatory element-I) of the IL-4 gene. Might change the DNA-binding specificity of other transcription factors and recruit them to unusual DNA sites.
SUBUNIT: Binds DNA as a dimer and can form stable heterodimers with C/EBP alpha and beta and with Fos protein. Interacts with ZNF638; this interaction increases transcriptional activation (By similarity).
SUBCELLULAR LOCATION: Nucleus.
SIMILARITY: Belongs to the bZIP family. C/EBP subfamily.
SIMILARITY: Contains 1 bZIP (basic-leucine zipper) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 18.36 RPKM in Skin - Not Sun Exposed (Suprapubic)
Total median expression: 495.07 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -139.90283-0.494 Picture PostScript Text
3' UTR -764.702994-0.255 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR004827 - bZIP

Pfam Domains:
PF07716 - Basic region leucine zipper

SCOP Domains:
46589 - tRNA-binding arm
52540 - P-loop containing nucleoside triphosphate hydrolases
75704 - Mitotic arrest deficient-like 1, Mad1
57959 - Leucine zipper domain

ModBase Predicted Comparative 3D Structure on P53567
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677 DNA binding
GO:0003700 transcription factor activity, sequence-specific DNA binding
GO:0005515 protein binding
GO:0008134 transcription factor binding
GO:0042803 protein homodimerization activity
GO:0043565 sequence-specific DNA binding
GO:0046982 protein heterodimerization activity

Biological Process:
GO:0001889 liver development
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006357 regulation of transcription from RNA polymerase II promoter
GO:0006366 transcription from RNA polymerase II promoter
GO:0006955 immune response
GO:0016071 mRNA metabolic process
GO:0030183 B cell differentiation
GO:0042267 natural killer cell mediated cytotoxicity
GO:0043353 enucleate erythrocyte differentiation
GO:0043388 positive regulation of DNA binding
GO:0043433 negative regulation of sequence-specific DNA binding transcription factor activity
GO:0045078 positive regulation of interferon-gamma biosynthetic process
GO:0045739 positive regulation of DNA repair
GO:0045944 positive regulation of transcription from RNA polymerase II promoter
GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm


-  Descriptions from all associated GenBank mRNAs
  BC007582 - Homo sapiens CCAAT/enhancer binding protein (C/EBP), gamma, mRNA (cDNA clone MGC:15566 IMAGE:3139979), complete cds.
U20240 - Human C/EBP gamma mRNA, complete cds.
JD407084 - Sequence 388108 from Patent EP1572962.
BC013128 - Homo sapiens CCAAT/enhancer binding protein (C/EBP), gamma, mRNA (cDNA clone MGC:5089 IMAGE:3445301), complete cds.
AK313634 - Homo sapiens cDNA, FLJ94205, Homo sapiens CCAAT/enhancer binding protein (C/EBP), gamma (CEBPG), mRNA.
JD194499 - Sequence 175523 from Patent EP1572962.
JD408575 - Sequence 389599 from Patent EP1572962.
JD411697 - Sequence 392721 from Patent EP1572962.
AB464475 - Synthetic construct DNA, clone: pF1KB9586, Homo sapiens CEBPG gene for CCAAT/enhancer binding protein (C/EBP), gamma, without stop codon, in Flexi system.
DQ896455 - Synthetic construct Homo sapiens clone IMAGE:100010915; FLH194476.01L; RZPDo839B1070D CCAAT/enhancer binding protein (C/EBP), gamma (CEBPG) gene, encodes complete protein.
CU680518 - Synthetic construct Homo sapiens gateway clone IMAGE:100020138 5' read CEBPG mRNA.
KJ890896 - Synthetic construct Homo sapiens clone ccsbBroadEn_00290 CEBPG gene, encodes complete protein.
BT019819 - Homo sapiens CCAAT/enhancer binding protein (C/EBP), gamma mRNA, complete cds.
BT019820 - Homo sapiens CCAAT/enhancer binding protein (C/EBP), gamma mRNA, complete cds.
EU176442 - Synthetic construct Homo sapiens clone IMAGE:100006518; FLH194483.01X; RZPDo839A08252D CCAAT/enhancer binding protein (C/EBP), gamma (CEBPG) gene, encodes complete protein.
JD522142 - Sequence 503166 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: B2R946, CEBPG_HUMAN, ENST00000284000.1, ENST00000284000.2, ENST00000284000.3, ENST00000284000.4, ENST00000284000.5, ENST00000284000.6, ENST00000284000.7, ENST00000284000.8, NM_001806, P53567, Q5U052, uc317kdr.1, uc317kdr.2
UCSC ID: ENST00000284000.9_4
RefSeq Accession: NM_001806.4
Protein: P53567 (aka CEBPG_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.