Human Gene CHTF8 (ENST00000448552.7_8) from GENCODE V47lift37
  Description: chromosome transmission fidelity factor 8, transcript variant 1 (from RefSeq NM_001039690.5)
Gencode Transcript: ENST00000448552.7_8
Gencode Gene: ENSG00000168802.14_12
Transcript (Including UTRs)
   Position: hg19 chr16:69,151,913-69,166,491 Size: 14,579 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr16:69,154,328-69,155,361 Size: 1,034 Coding Exon Count: 3 

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RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:69,151,913-69,166,491)mRNA (may differ from genome)Protein (121 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
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-  Comments and Description Text from UniProtKB
  ID: CTF8_HUMAN
DESCRIPTION: RecName: Full=Chromosome transmission fidelity protein 8 homolog; Short=hCTF8;
FUNCTION: Chromosome cohesion factor involved in sister chromatid cohesion and fidelity of chromosome transmission. Component of one of the cell nuclear antigen loader complexes, CTF18-replication factor C (CTF18-RFC), which consists of CTF18, CTF8, DCC1, RFC2, RFC3, RFC4 and RFC5. The CTF18-RFC complex binds to single- stranded and primed DNAs and has weak ATPase activity that is stimulated the presence of primed DNA, replication protein A (RPA) and proliferating cell nuclear antigen (PCNA). The CTF18-RFC complex catalyzes the ATP-dependent loading of PCNA onto primed and gapped DNA. It also interacts with and stimulates POLH, which is suggestive of a protein network that coordinates DNA repair, recombination and chromosome cohesion reactions with replication fork progression.
SUBUNIT: Component of the CTF18-RFC complex, which consists of CTF18, CTF8, DCC1, RFC2, RFC3, RFC4 and RFC5. The CTF18-RFC complex does not interact with the Rad9/Rad1/Hus1 complex. The CTF18-RFC complex interacts with POLH. CTF18/CTF8/DCC1 associate with PCNA. CTF8 exists as a dimer with DCC1.
SUBCELLULAR LOCATION: Nucleus. Note=Associates with chromatin during S phase.
TISSUE SPECIFICITY: Ubiquitously expressed, with abundant expression in kidney, skeletal muscle, testis, liver, ovary, and heart and moderate expression in prostate. Expression is significantly reduced in renal and prostate tumors. No differential expression in breast cancer cells, between lobular carcinoma and normal lobules.
SIMILARITY: Belongs to the CTF8 family.
CAUTION: mRNA expression studied by PubMed:12477976 does not differentiate between isoform 1 and isoform 2.
SEQUENCE CAUTION: Sequence=AAQ08897.1; Type=Erroneous translation; Note=Wrong choice of CDS; Sequence=BAA91144.1; Type=Erroneous translation; Note=Wrong choice of CDS; Sequence=EAW83250.1; Type=Erroneous translation; Note=Wrong choice of CDS;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • C495626 14-deoxy-11,12-didehydroandrographolide
  • C111118 2',3,3',4',5-pentachloro-4-hydroxybiphenyl
  • C553817 7-(benzylamino)-1,3,4,8-tetrahydropyrrolo(4,3,2-de)quinolin-8(1H)-one
  • D003042 Cocaine
  • D011794 Quercetin
  • C016517 indole-3-carbinol

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.64 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 275.20 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -64.30140-0.459 Picture PostScript Text
3' UTR -959.302415-0.397 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR018607 - Chromosome_trans_fidel_Ctf8

Pfam Domains:
PF09696 - Ctf8

ModBase Predicted Comparative 3D Structure on P0CG13
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003677 DNA binding
GO:0003689 DNA clamp loader activity
GO:0043142 single-stranded DNA-dependent ATPase activity

Biological Process:
GO:0006260 DNA replication
GO:0007049 cell cycle
GO:0007064 mitotic sister chromatid cohesion
GO:1900264 positive regulation of DNA-directed DNA polymerase activity

Cellular Component:
GO:0005634 nucleus
GO:0031390 Ctf18 RFC-like complex


-  Descriptions from all associated GenBank mRNAs
  AL833902 - Homo sapiens mRNA; cDNA DKFZp434K0218 (from clone DKFZp434K0218).
BC018700 - Homo sapiens CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae), mRNA (cDNA clone MGC:4613 IMAGE:3504183), complete cds.
AF525164 - Homo sapiens DERPC mRNA, complete cds.
BC069059 - Homo sapiens CTF8, chromosome transmission fidelity factor 8 homolog (S. cerevisiae), mRNA (cDNA clone IMAGE:6142942).
JD498813 - Sequence 479837 from Patent EP1572962.
JD214808 - Sequence 195832 from Patent EP1572962.
JD477306 - Sequence 458330 from Patent EP1572962.
JD217106 - Sequence 198130 from Patent EP1572962.
JD278184 - Sequence 259208 from Patent EP1572962.
JD425715 - Sequence 406739 from Patent EP1572962.
JD060691 - Sequence 41715 from Patent EP1572962.
JD420655 - Sequence 401679 from Patent EP1572962.
JD323110 - Sequence 304134 from Patent EP1572962.
JD092620 - Sequence 73644 from Patent EP1572962.
JD197922 - Sequence 178946 from Patent EP1572962.
JD290743 - Sequence 271767 from Patent EP1572962.
JD252014 - Sequence 233038 from Patent EP1572962.
JD061220 - Sequence 42244 from Patent EP1572962.
JD435726 - Sequence 416750 from Patent EP1572962.
JD556728 - Sequence 537752 from Patent EP1572962.
JD334983 - Sequence 316007 from Patent EP1572962.
JD318758 - Sequence 299782 from Patent EP1572962.
JD359389 - Sequence 340413 from Patent EP1572962.
JD378977 - Sequence 360001 from Patent EP1572962.
KJ902717 - Synthetic construct Homo sapiens clone ccsbBroadEn_12111 CHTF8 gene, encodes complete protein.
AB464499 - Synthetic construct DNA, clone: pF1KB8845, Homo sapiens CTF8 gene for chromosome transmission fidelity factor 8 protein isoform B, without stop codon, in Flexi system.
AK000407 - Homo sapiens cDNA FLJ20400 fis, clone KAT00587.
AB527966 - Synthetic construct DNA, clone: pF1KB0921, Homo sapiens CHTF8 gene for Protein DERPC, without stop codon, in Flexi system.
JD296711 - Sequence 277735 from Patent EP1572962.
JD274802 - Sequence 255826 from Patent EP1572962.
JD323739 - Sequence 304763 from Patent EP1572962.
JD504651 - Sequence 485675 from Patent EP1572962.
DQ596017 - Homo sapiens piRNA piR-34083, complete sequence.

-  Other Names for This Gene
  Alternate Gene Symbols: A8MYX8, CHTF8 , CTF8, CTF8_HUMAN, ENST00000448552.1, ENST00000448552.2, ENST00000448552.3, ENST00000448552.4, ENST00000448552.5, ENST00000448552.6, NM_001039690, P0CG13, Q71E72, Q8NDH8, Q8WV66, Q9NX73, uc320qcq.1, uc320qcq.2
UCSC ID: ENST00000448552.7_8
RefSeq Accession: NM_001039690.5
Protein: P0CG13 (aka CTF8_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.