Human Gene CTDNEP1 (ENST00000574322.6_7) from GENCODE V47lift37
  Description: CTD nuclear envelope phosphatase 1, transcript variant 2 (from RefSeq NM_001143775.2)
Gencode Transcript: ENST00000574322.6_7
Gencode Gene: ENSG00000175826.12_15
Transcript (Including UTRs)
   Position: hg19 chr17:7,146,910-7,155,053 Size: 8,144 Total Exon Count: 8 Strand: -
Coding Region
   Position: hg19 chr17:7,147,504-7,154,615 Size: 7,112 Coding Exon Count: 8 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:7,146,910-7,155,053)mRNA (may differ from genome)Protein (244 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedReactomeUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CNEP1_HUMAN
DESCRIPTION: RecName: Full=CTD nuclear envelope phosphatase 1; EC=3.1.3.16; AltName: Full=Serine/threonine-protein phosphatase dullard;
FUNCTION: Serine/threonine protein phosphatase forming with CNEP1R1 an active phosphatase complex that dephosphorylates and may activate LPIN1 and LPIN2. LPIN1 and LPIN2 are phosphatidate phosphatases that catalyze the conversion of phosphatidic acid to diacylglycerol and control the metabolism of fatty acids at differents levels. May indirectly modulate the lipid composition of nuclear and/or endoplasmic reticulum membranes and be required for proper nuclear membrane morphology and/or dynamics. May also indirectly regulate the production of lipid droplets and triacylglycerol. May antagonize BMP signaling.
CATALYTIC ACTIVITY: A phosphoprotein + H(2)O = a protein + phosphate.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=18 mM for p-nitrophenylphosphate; pH dependence: Optimum pH is 5.5;
SUBUNIT: Interacts with CNEP1R1; the complex dephosphorylates LPIN1 and LPIN2.
INTERACTION: Q8N9A8:CNEP1R1; NbExp=4; IntAct=EBI-5323433, EBI-5323455;
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Single-pass membrane protein. Nucleus membrane; Single-pass membrane protein.
TISSUE SPECIFICITY: Muscle specific with lower expression in other metabolic tissues.
SIMILARITY: Belongs to the dullard family.
SIMILARITY: Contains 1 FCP1 homology domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 131.67 RPKM in Muscle - Skeletal
Total median expression: 3186.22 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -189.74438-0.433 Picture PostScript Text
3' UTR -198.80594-0.335 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011948 - Dullard_phosphatase
IPR023214 - HAD-like_dom
IPR004274 - NIF

Pfam Domains:
PF03031 - NLI interacting factor-like phosphatase

SCOP Domains:
56784 - HAD-like

ModBase Predicted Comparative 3D Structure on O95476
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004721 phosphoprotein phosphatase activity
GO:0004722 protein serine/threonine phosphatase activity
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0016791 phosphatase activity

Biological Process:
GO:0006470 protein dephosphorylation
GO:0006998 nuclear envelope organization
GO:0007077 mitotic nuclear envelope disassembly
GO:0007276 gamete generation
GO:0007498 mesoderm development
GO:0010867 positive regulation of triglyceride biosynthetic process
GO:0034504 protein localization to nucleus
GO:0090263 positive regulation of canonical Wnt signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005635 nuclear envelope
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0005811 lipid particle
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0031965 nuclear membrane
GO:0071595 Nem1-Spo7 phosphatase complex


-  Descriptions from all associated GenBank mRNAs
  AJ011916 - Homo sapiens mRNA for hypothetical protein.
BC009295 - Homo sapiens dullard homolog (Xenopus laevis), mRNA (cDNA clone MGC:16648 IMAGE:4123279), complete cds.
JD058016 - Sequence 39040 from Patent EP1572962.
JD515988 - Sequence 497012 from Patent EP1572962.
JD549636 - Sequence 530660 from Patent EP1572962.
JD373734 - Sequence 354758 from Patent EP1572962.
JD339354 - Sequence 320378 from Patent EP1572962.
JD343294 - Sequence 324318 from Patent EP1572962.
AY364239 - Homo sapiens clone peg2101 DULLARD (DULLARD) mRNA, complete cds.
JD338839 - Sequence 319863 from Patent EP1572962.
KJ898484 - Synthetic construct Homo sapiens clone ccsbBroadEn_07878 CTDNEP1 gene, encodes complete protein.
DQ893130 - Synthetic construct clone IMAGE:100005760; FLH194058.01X; RZPDo839E1279D dullard homolog (Xenopus laevis) (DULLARD) gene, encodes complete protein.
DQ896409 - Synthetic construct Homo sapiens clone IMAGE:100010869; FLH194054.01L; RZPDo839E1269D dullard homolog (Xenopus laevis) (DULLARD) gene, encodes complete protein.
JD390722 - Sequence 371746 from Patent EP1572962.
JD140465 - Sequence 121489 from Patent EP1572962.
JD125051 - Sequence 106075 from Patent EP1572962.
JD532406 - Sequence 513430 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein O95476 (Reactome details) participates in the following event(s):

R-HSA-4419948 CTDNEP1:CNEP1R1 dephosphorylates LPIN
R-HSA-4419969 Depolymerisation of the Nuclear Lamina
R-HSA-2980766 Nuclear Envelope Breakdown
R-HSA-68875 Mitotic Prophase
R-HSA-68886 M Phase
R-HSA-69278 Cell Cycle (Mitotic)
R-HSA-1640170 Cell Cycle

-  Other Names for This Gene
  Alternate Gene Symbols: CNEP1_HUMAN, D3DTN7, DULLARD, ENST00000574322.1, ENST00000574322.2, ENST00000574322.3, ENST00000574322.4, ENST00000574322.5, NM_001143775, O95476, Q96GQ9, uc326dbf.1, uc326dbf.2
UCSC ID: ENST00000574322.6_7
RefSeq Accession: NM_001143775.2
Protein: O95476 (aka CNEP1_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.