Human Gene DIS3L2 (ENST00000325385.12_4) from GENCODE V47lift37
  Description: DIS3 like 3'-5' exoribonuclease 2, transcript variant 1 (from RefSeq NM_152383.5)
Gencode Transcript: ENST00000325385.12_4
Gencode Gene: ENSG00000144535.20_11
Transcript (Including UTRs)
   Position: hg19 chr2:232,826,423-233,201,902 Size: 375,480 Total Exon Count: 21 Strand: +
Coding Region
   Position: hg19 chr2:232,879,638-233,201,340 Size: 321,703 Coding Exon Count: 20 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:232,826,423-233,201,902)mRNA (may differ from genome)Protein (885 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: DI3L2_HUMAN
DESCRIPTION: RecName: Full=DIS3-like exonuclease 2; EC=3.1.13.-;
FUNCTION: Ribonuclease that plays a critical role in RNA metabolism. It is essential for correct mitosis, and negatively regulates cell proliferation.
SUBCELLULAR LOCATION: Cytoplasm.
POLYMORPHISM: Disrupted by a t(2;7)(q37.1;q21.3) chromosomal translocation found in a patient suffering from Marfanoid habitus and skeletal anomalies. However, its absence does not seem to be the cause of the disease.
DISEASE: Defects in DIS3L2 are the cause of Perlman syndrome (PRLMNS) [MIM:267000]. An autosomal recessive congenital overgrowth syndrome. Affected children are large at birth, are hypotonic, and show organomegaly, characteristic facial dysmorphisms (inverted V-shaped upper lip, prominent forehead, deep-set eyes, broad and flat nasal bridge, and low-set ears), renal anomalies (nephromegaly and hydronephrosis), frequent neurodevelopmental delay, and high neonatal mortality. Perlman syndrome is associated with a high risk of Wilms tumor. Histologic examination of the kidneys in affected children shows frequent nephroblastomatosis, which is a precursor lesion for Wilms tumor.
SIMILARITY: Belongs to the RNR ribonuclease family.
CAUTION: Although assigned as two separate genes (DIS3L2 and FAM6A), it is quite clear that the gene FAM6A described by PubMed:11352565 is a fragmentary prediction of DIS3L2.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: DIS3L2
Diseases sorted by gene-association score: perlman syndrome* (1699), wilms tumor predisposition (18), wilms tumor susceptibility-5* (13), hydronephrosis (5)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 8.63 RPKM in Testis
Total median expression: 174.10 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -47.20146-0.323 Picture PostScript Text
3' UTR -214.80562-0.382 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001900 - RNase_II/R
IPR022966 - RNase_II/R_CS

Pfam Domains:
PF00773 - RNB domain
PF17216 - Rrp44-like cold shock domain
PF17849 - Dis3-like cold-shock domain 2 (CSD2)
PF17877 - DIS3-like exonuclease 2 C terminal

SCOP Domains:
50249 - Nucleic acid-binding proteins

ModBase Predicted Comparative 3D Structure on Q8IYB7
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details Gene DetailsGene Details 
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 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000175 3'-5'-exoribonuclease activity
GO:0000287 magnesium ion binding
GO:0003723 RNA binding
GO:0004518 nuclease activity
GO:0004527 exonuclease activity
GO:0004540 ribonuclease activity
GO:0005515 protein binding
GO:0008266 poly(U) RNA binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding

Biological Process:
GO:0000278 mitotic cell cycle
GO:0000291 nuclear-transcribed mRNA catabolic process, exonucleolytic
GO:0006364 rRNA processing
GO:0007049 cell cycle
GO:0008285 negative regulation of cell proliferation
GO:0010587 miRNA catabolic process
GO:0019827 stem cell population maintenance
GO:0034427 nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0051301 cell division
GO:0051306 mitotic sister chromatid separation
GO:0090305 nucleic acid phosphodiester bond hydrolysis
GO:0090501 RNA phosphodiester bond hydrolysis
GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
GO:1990074 polyuridylation-dependent mRNA catabolic process

Cellular Component:
GO:0000178 exosome (RNase complex)
GO:0000932 P-body
GO:0005737 cytoplasm
GO:0005844 polysome


-  Descriptions from all associated GenBank mRNAs
  AK094293 - Homo sapiens cDNA FLJ36974 fis, clone BRACE2006264.
AF443854 - Homo sapiens hypothetical protein mRNA, complete cds.
BC026166 - Homo sapiens DIS3 mitotic control homolog (S. cerevisiae)-like 2, mRNA (cDNA clone MGC:26851 IMAGE:4822064), complete cds.
BC036113 - Homo sapiens DIS3 mitotic control homolog (S. cerevisiae)-like 2, mRNA (cDNA clone MGC:33943 IMAGE:5297794), complete cds.
BX648325 - Homo sapiens mRNA; cDNA DKFZp686O24131 (from clone DKFZp686O24131).
AK295363 - Homo sapiens cDNA FLJ60550 complete cds, weakly similar to Exosome complex exonuclease RRP44 (EC 3.1.13.-).
KJ903751 - Synthetic construct Homo sapiens clone ccsbBroadEn_13145 DIS3L2 gene, encodes complete protein.
EU176261 - Synthetic construct Homo sapiens clone IMAGE:100006359; FLH168272.01X; RZPDo839E0792D DIS3 mitotic control homolog (S. cerevisiae)-like 2 (DIS3L2) gene, encodes complete protein.
EU176572 - Synthetic construct Homo sapiens clone IMAGE:100011362; FLH168268.01L; RZPDo839E0791D DIS3 mitotic control homolog (S. cerevisiae)-like 2 (DIS3L2) gene, encodes complete protein.
AL834174 - Homo sapiens mRNA; cDNA DKFZp434L1426 (from clone DKFZp434L1426).
DQ570128 - Homo sapiens piRNA piR-30240, complete sequence.
AK090419 - Homo sapiens mRNA for FLJ00327 protein.
BC030113 - Homo sapiens hypothetical protein MGC42174, mRNA (cDNA clone IMAGE:4800014).
JD522526 - Sequence 503550 from Patent EP1572962.
JD124674 - Sequence 105698 from Patent EP1572962.
JD453412 - Sequence 434436 from Patent EP1572962.
JD545706 - Sequence 526730 from Patent EP1572962.
JD064892 - Sequence 45916 from Patent EP1572962.
JD278088 - Sequence 259112 from Patent EP1572962.
JD221174 - Sequence 202198 from Patent EP1572962.
JD076790 - Sequence 57814 from Patent EP1572962.
JD406375 - Sequence 387399 from Patent EP1572962.
JD523664 - Sequence 504688 from Patent EP1572962.
JD444572 - Sequence 425596 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: DI3L2_HUMAN, DIS3L2 , ENST00000325385.1, ENST00000325385.10, ENST00000325385.11, ENST00000325385.2, ENST00000325385.3, ENST00000325385.4, ENST00000325385.5, ENST00000325385.6, ENST00000325385.7, ENST00000325385.8, ENST00000325385.9, FAM6A, NM_152383, Q53S79, Q580W6, Q5XKH0, Q69YG5, Q6AW99, Q7Z4T6, Q8IYB7, Q8N9K9, uc317rwd.1, uc317rwd.2
UCSC ID: ENST00000325385.12_4
RefSeq Accession: NM_152383.5
Protein: Q8IYB7 (aka DI3L2_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene DIS3L2:
wilms-ov (Wilms Tumor Predisposition)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.