Human Gene EXOC6 (ENST00000260762.10_4) from GENCODE V48lift37
  Description: exocyst complex component 6, transcript variant 1 (from RefSeq NM_019053.6)
Gencode Transcript: ENST00000260762.10_4
Gencode Gene: ENSG00000138190.17_11
Transcript (Including UTRs)
   Position: hg19 chr10:94,608,277-94,819,247 Size: 210,971 Total Exon Count: 22 Strand: +
Coding Region
   Position: hg19 chr10:94,608,291-94,818,112 Size: 209,822 Coding Exon Count: 22 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2025-04-10 15:10:12

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr10:94,608,277-94,819,247)mRNA (may differ from genome)Protein (804 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIneXtProtOMIMPubMed
ReactomeUniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: EXOC6_HUMAN
DESCRIPTION: RecName: Full=Exocyst complex component 6; AltName: Full=Exocyst complex component Sec15A; AltName: Full=SEC15-like protein 1;
FUNCTION: Component of the exocyst complex involved in the docking of exocytic vesicles with fusion sites on the plasma membrane. Together with RAB11A, RAB3IP, RAB8A, PARD3, PRKCI, ANXA2, CDC42 and DNMBP promotes transcytosis of PODXL to the apical membrane initiation sites (AMIS), apical surface formation and lumenogenesis (By similarity).
SUBUNIT: The exocyst complex is composed of EXOC1, EXOC2, EXOC3, EXOC4, EXOC5, EXOC6, EXOC7 and EXOC8. Interacts with CEP110. Interacts with RAB11A in a GTP-dependent manner (By similarity).
SIMILARITY: Belongs to the SEC15 family.
SEQUENCE CAUTION: Sequence=AAF37262.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: EXOC6
Diseases sorted by gene-association score: bardet-biedl syndrome 18 (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.55 RPKM in Thyroid
Total median expression: 125.20 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
3' UTR -264.601135-0.233 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007225 - Sec15

Pfam Domains:
PF04091 - Exocyst complex subunit Sec15-like

SCOP Domains:
103657 - BAR/IMD domain-like

ModBase Predicted Comparative 3D Structure on Q8TAG9
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserGenome Browser
Gene DetailsGene Details Gene DetailsGene DetailsGene Details
Gene SorterGene Sorter Gene SorterGene SorterGene Sorter
 RGDEnsembl WormBaseSGD
    Protein SequenceProtein Sequence
    AlignmentAlignment

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding

Biological Process:
GO:0006887 exocytosis
GO:0006904 vesicle docking involved in exocytosis
GO:0015031 protein transport

Cellular Component:
GO:0000145 exocyst
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0030426 growth cone
GO:0042995 cell projection
GO:0048471 perinuclear region of cytoplasm
GO:0090543 Flemming body


-  Descriptions from all associated GenBank mRNAs
  AK128190 - Homo sapiens cDNA FLJ46316 fis, clone TESTI4041482, highly similar to Exocyst complex component 6.
AK300285 - Homo sapiens cDNA FLJ56022 complete cds, highly similar to Exocyst complex component 6.
LP895202 - Sequence 66 from Patent EP3253886.
AK293857 - Homo sapiens cDNA FLJ55550 complete cds, highly similar to Exocyst complex component 6.
AF220217 - Homo sapiens rsec15-like protein mRNA, partial cds.
AL832501 - Homo sapiens mRNA; cDNA DKFZp686C1252 (from clone DKFZp686C1252).
EF571007 - Homo sapiens SEC15-like protein 3 (SEC15L3) mRNA, complete cds.
AK315544 - Homo sapiens cDNA, FLJ96612, highly similar to Homo sapiens SEC15 (S. cerevisiae)-like (SEC15L), mRNA.
BC028395 - Homo sapiens exocyst complex component 6, mRNA (cDNA clone MGC:33397 IMAGE:4820245), complete cds.
CU688490 - Synthetic construct Homo sapiens gateway clone IMAGE:100020426 5' read EXOC6 mRNA.
EU832839 - Synthetic construct Homo sapiens clone HAIB:100067868; DKFZo008H0333 exocyst complex component 6 protein (EXOC6) gene, encodes complete protein.
GQ129240 - Synthetic construct Homo sapiens clone HAIB:100068530; DKFZo004H0334 exocyst complex component 6 protein (EXOC6) gene, partial cds.
KJ898998 - Synthetic construct Homo sapiens clone ccsbBroadEn_08392 EXOC6 gene, encodes complete protein.
AL137438 - Homo sapiens mRNA; cDNA DKFZp761I2124 (from clone DKFZp761I2124); partial cds.
AK002113 - Homo sapiens cDNA FLJ11251 fis, clone PLACE1008813.
AK123268 - Homo sapiens cDNA FLJ41274 fis, clone BRAMY2036615, highly similar to Rattus norvegicus SEC15 (Sec15).
JD163362 - Sequence 144386 from Patent EP1572962.
JD542109 - Sequence 523133 from Patent EP1572962.
BC041403 - Homo sapiens exocyst complex component 6, mRNA (cDNA clone IMAGE:5278132), with apparent retained intron.
JD413024 - Sequence 394048 from Patent EP1572962.
JD377610 - Sequence 358634 from Patent EP1572962.
JD507279 - Sequence 488303 from Patent EP1572962.
JD267265 - Sequence 248289 from Patent EP1572962.
JD503567 - Sequence 484591 from Patent EP1572962.
JD039371 - Sequence 20395 from Patent EP1572962.
JD086877 - Sequence 67901 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8TAG9 (Reactome details) participates in the following event(s):

R-HSA-5623524 The exocyst complex binds to RAB3IP in the ciliary targeting complex
R-HSA-264876 Insulin processing
R-HSA-1445148 Translocation of GLUT4 to the plasma membrane
R-HSA-2980736 Peptide hormone metabolism
R-HSA-5620916 VxPx cargo-targeting to cilium
R-HSA-199991 Membrane Trafficking
R-HSA-392499 Metabolism of proteins
R-HSA-5620920 Cargo trafficking to the periciliary membrane
R-HSA-5653656 Vesicle-mediated transport
R-HSA-5617833 Cilium Assembly
R-HSA-1852241 Organelle biogenesis and maintenance

-  Other Names for This Gene
  Alternate Gene Symbols: E9PHI3, ENST00000260762.1, ENST00000260762.2, ENST00000260762.3, ENST00000260762.4, ENST00000260762.5, ENST00000260762.6, ENST00000260762.7, ENST00000260762.8, ENST00000260762.9, EXOC6_HUMAN, NM_019053, Q5VXH8, Q8TAG9, Q9NZ24, SEC15A, SEC15L, SEC15L1, uc317gls.1, uc317gls.2
UCSC ID: ENST00000260762.10_4
RefSeq Accession: NM_019053.6
Protein: Q8TAG9 (aka EXOC6_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.