Human Gene GOLGA4 (ENST00000361924.7_8) from GENCODE V47lift37
  Description: golgin A4, transcript variant 2 (from RefSeq NM_002078.5)
Gencode Transcript: ENST00000361924.7_8
Gencode Gene: ENSG00000144674.19_17
Transcript (Including UTRs)
   Position: hg19 chr3:37,284,762-37,408,370 Size: 123,609 Total Exon Count: 24 Strand: +
Coding Region
   Position: hg19 chr3:37,285,042-37,402,763 Size: 117,722 Coding Exon Count: 23 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:37,284,762-37,408,370)mRNA (may differ from genome)Protein (2230 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: GOGA4_HUMAN
DESCRIPTION: RecName: Full=Golgin subfamily A member 4; AltName: Full=256 kDa golgin; AltName: Full=Golgin-245; AltName: Full=Protein 72.1; AltName: Full=Trans-Golgi p230;
FUNCTION: May play a role in delivery of transport vesicles containing GPI-linked proteins from the trans-Golgi network through its interaction with MACF1.
SUBUNIT: Homodimer. Interacts with GTP bound ARL1. Interacts with MACF1.
INTERACTION: Q96NW4:ANKRD27; NbExp=2; IntAct=EBI-1037845, EBI-6125599;
SUBCELLULAR LOCATION: Cytoplasm. Golgi apparatus membrane; Peripheral membrane protein. Golgi apparatus.
DOMAIN: Extended rod-like protein with coiled-coil domains.
MISCELLANEOUS: Antibodies against GOLGA4 are present in sera from patients with Sjoegren syndrome. Sera from patients with Sjoegren syndrome often contain antibodies that react with normal components of the Golgi complex.
SIMILARITY: Contains 1 GRIP domain.
SEQUENCE CAUTION: Sequence=CAA58041.1; Type=Frameshift; Positions=2153;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 23.66 RPKM in Muscle - Skeletal
Total median expression: 573.50 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -129.30280-0.462 Picture PostScript Text
3' UTR -181.10833-0.217 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000237 - GRIP

Pfam Domains:
PF01465 - GRIP domain

SCOP Domains:
101283 - GRIP domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1R4A - X-ray MuPIT 1UPT - X-ray


ModBase Predicted Comparative 3D Structure on Q13439
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0051020 GTPase binding

Biological Process:
GO:0016192 vesicle-mediated transport
GO:0043001 Golgi to plasma membrane protein transport
GO:0045773 positive regulation of axon extension

Cellular Component:
GO:0000139 Golgi membrane
GO:0005737 cytoplasm
GO:0005794 Golgi apparatus
GO:0005802 trans-Golgi network
GO:0005829 cytosol
GO:0016020 membrane
GO:0043231 intracellular membrane-bounded organelle
GO:0070062 extracellular exosome


-  Descriptions from all associated GenBank mRNAs
  BC045543 - Homo sapiens golgi autoantigen, golgin subfamily a, 4, mRNA (cDNA clone IMAGE:4825929), complete cds.
BC050444 - Homo sapiens golgi autoantigen, golgin subfamily a, 4, mRNA (cDNA clone IMAGE:6500360), complete cds.
AK290550 - Homo sapiens cDNA FLJ77065 partial cds, highly similar to Homo sapiens golgi autoantigen, golgin subfamily a, 4 (GOLGA4), mRNA.
BC023648 - Homo sapiens golgi autoantigen, golgin subfamily a, 4, mRNA (cDNA clone IMAGE:3959585), partial cds.
AK300192 - Homo sapiens cDNA FLJ54338 partial cds, highly similar to Golgin subfamily A member 4.
AK307429 - Homo sapiens cDNA, FLJ97377.
AB209693 - Homo sapiens mRNA for golgi autoantigen, golgin subfamily a, 4 variant protein.
U41740 - Human trans-Golgi p230 mRNA, complete cds.
X82834 - H.sapiens mRNA for golgin.
BC172405 - Synthetic construct Homo sapiens clone IMAGE:100069099, MGC:199110 golgi autoantigen, golgin subfamily a, 4 (GOLGA4) mRNA, encodes complete protein.
CU690684 - Synthetic construct Homo sapiens gateway clone IMAGE:100022740 5' read GOLGA4 mRNA.
KJ901460 - Synthetic construct Homo sapiens clone ccsbBroadEn_10854 GOLGA4 gene, encodes complete protein.
U31906 - Homo sapiens golgin-245 mRNA, complete cds.
AF273047 - Homo sapiens CTCL tumor antigen se20-7 mRNA, partial cds.
JD232532 - Sequence 213556 from Patent EP1572962.
JD210320 - Sequence 191344 from Patent EP1572962.
X76942 - H.sapiens mRNA for 72.1 protein.
JD130585 - Sequence 111609 from Patent EP1572962.
JD557208 - Sequence 538232 from Patent EP1572962.
JD436686 - Sequence 417710 from Patent EP1572962.
JD038013 - Sequence 19037 from Patent EP1572962.
JD286385 - Sequence 267409 from Patent EP1572962.
JD486260 - Sequence 467284 from Patent EP1572962.
AY531221 - Homo sapiens antigen MU-RMS-40.18 mRNA, partial cds.
KJ818093 - Homo sapiens centrosome-related protein F46 (CRPF46) mRNA, partial cds.
BX640663 - Homo sapiens mRNA; cDNA DKFZp686K22142 (from clone DKFZp686K22142).
JD454160 - Sequence 435184 from Patent EP1572962.
JD465672 - Sequence 446696 from Patent EP1572962.
JD546945 - Sequence 527969 from Patent EP1572962.
JD037998 - Sequence 19022 from Patent EP1572962.
JD267720 - Sequence 248744 from Patent EP1572962.
JD502617 - Sequence 483641 from Patent EP1572962.
JD093223 - Sequence 74247 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q13439 (Reactome details) participates in the following event(s):

R-HSA-6814091 ARL1 recruits TGN Golgin homodimers
R-HSA-6811431 RAB6:GTP binds the GARP and COG complexes, t-SNAREs and endosome-derived vesicles
R-HSA-6811440 Retrograde transport at the Trans-Golgi-Network
R-HSA-6811442 Intra-Golgi and retrograde Golgi-to-ER traffic
R-HSA-199991 Membrane Trafficking
R-HSA-5653656 Vesicle-mediated transport

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000361924.1, ENST00000361924.2, ENST00000361924.3, ENST00000361924.4, ENST00000361924.5, ENST00000361924.6, F8W8Q7, GOGA4_HUMAN, NM_002078, Q13270, Q13439, Q13654, Q14436, Q59EW8, uc318ckt.1, uc318ckt.2
UCSC ID: ENST00000361924.7_8
RefSeq Accession: NM_002078.5
Protein: Q13439 (aka GOGA4_HUMAN or GOA4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.