Human Gene HCAR2 (ENST00000328880.6_6) from GENCODE V47lift37
  Description: hydroxycarboxylic acid receptor 2 (from RefSeq NM_177551.4)
Gencode Transcript: ENST00000328880.6_6
Gencode Gene: ENSG00000182782.8_8
Transcript (Including UTRs)
   Position: hg19 chr12:123,185,840-123,187,904 Size: 2,065 Total Exon Count: 1 Strand: -
Coding Region
   Position: hg19 chr12:123,186,739-123,187,830 Size: 1,092 Coding Exon Count: 1 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA DescriptionsPathways
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:123,185,840-123,187,904)mRNA (may differ from genome)Protein (363 aa)
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HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: HCAR2_HUMAN
DESCRIPTION: RecName: Full=Hydroxycarboxylic acid receptor 2; AltName: Full=G-protein coupled receptor 109A; AltName: Full=G-protein coupled receptor HM74A; AltName: Full=Niacin receptor 1; AltName: Full=Nicotinic acid receptor;
FUNCTION: Acts as a high affinity receptor for both nicotinic acid (also known as niacin) and (D)-beta-hydroxybutyrate and mediates increased adiponectin secretion and decreased lipolysis through G(i)-protein-mediated inhibition of adenylyl cyclase. This pharmacological effect requires nicotinic acid doses that are much higher than those provided by a normal diet. Mediates nicotinic acid-induced apoptosis in mature neutrophils. Receptor activation by nicotinic acid results in reduced cAMP levels which may affect activity of cAMP-dependent protein kinase A and phosphorylation of target proteins, leading to neutrophil apoptosis. The rank order of potency for the displacement of nicotinic acid binding is 5- methyl pyrazole-3-carboxylic acid = pyridine-3-acetic acid > acifran > 5-methyl nicotinic acid = acipimox >> nicotinuric acid = nicotinamide.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Expression largely restricted to adipose tissue and spleen. Expressed on mature neutrophils but not on immature neutrophils or eosinophils.
DEVELOPMENTAL STAGE: Expression in neutrophils occurs in the late terminal differentiation phase.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/gpr109a/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -12.5074-0.169 Picture PostScript Text
3' UTR -290.30899-0.323 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam
IPR002286 - P2_purnocptor

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on Q8TDS4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0070553 nicotinic acid receptor activity

Biological Process:
GO:0001781 neutrophil apoptotic process
GO:0006915 apoptotic process
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0033031 positive regulation of neutrophil apoptotic process
GO:0050995 negative regulation of lipid catabolic process
GO:0070165 positive regulation of adiponectin secretion

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030054 cell junction


-  Descriptions from all associated GenBank mRNAs
  BC063461 - Homo sapiens G protein-coupled receptor 109A, mRNA (cDNA clone IMAGE:5176597), containing frame-shift errors.
BC027965 - Homo sapiens niacin receptor 1, mRNA (cDNA clone MGC:34442 IMAGE:5222688), complete cds.
LP895879 - Sequence 743 from Patent EP3253886.
BC056419 - Homo sapiens niacin receptor 1, mRNA (cDNA clone MGC:65083 IMAGE:5747743), complete cds.
JD545109 - Sequence 526133 from Patent EP1572962.
AK290915 - Homo sapiens cDNA FLJ75123 complete cds, highly similar to Homo sapiens G protein-coupled receptor HM74a (HM74a), mRNA.
JD343386 - Sequence 324410 from Patent EP1572962.
JD261006 - Sequence 242030 from Patent EP1572962.
JD252029 - Sequence 233053 from Patent EP1572962.
JD165168 - Sequence 146192 from Patent EP1572962.
JD234629 - Sequence 215653 from Patent EP1572962.
JD454787 - Sequence 435811 from Patent EP1572962.
JD146159 - Sequence 127183 from Patent EP1572962.
JD146160 - Sequence 127184 from Patent EP1572962.
JD497032 - Sequence 478056 from Patent EP1572962.
JD139604 - Sequence 120628 from Patent EP1572962.
AY148884 - Homo sapiens G protein-coupled receptor HM74a mRNA, complete cds.
JD042529 - Sequence 23553 from Patent EP1572962.
JD429724 - Sequence 410748 from Patent EP1572962.
JD085030 - Sequence 66054 from Patent EP1572962.
JD085029 - Sequence 66053 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8TDS4 (Reactome details) participates in the following event(s):

R-HSA-444661 HCAR2 binds HCAR2 ligands
R-HSA-749454 The Ligand:GPCR:Gi complex dissociates
R-HSA-749456 Liganded Gi-activating GPCRs bind inactive heterotrimeric G-protein Gi
R-HSA-380073 Liganded Gi-activating GPCR acts as a GEF for Gi
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-3296197 Hydroxycarboxylic acid-binding receptors
R-HSA-418594 G alpha (i) signalling events
R-HSA-500792 GPCR ligand binding
R-HSA-388396 GPCR downstream signalling
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A0PJL5, A7LGG3, ENST00000328880.1, ENST00000328880.2, ENST00000328880.3, ENST00000328880.4, ENST00000328880.5, GPR109A, HCA2, HCAR2_HUMAN, HM74A, NIACR1, NM_177551, Q8TDS4, uc317spj.1, uc317spj.2
UCSC ID: ENST00000328880.6_6
RefSeq Accession: NM_177551.4
Protein: Q8TDS4 (aka HCAR2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.