Human Gene IL6ST (ENST00000381298.7_7) from GENCODE V47lift37
  Description: interleukin 6 cytokine family signal transducer, transcript variant 4 (from RefSeq NR_120480.2)
Gencode Transcript: ENST00000381298.7_7
Gencode Gene: ENSG00000134352.21_14
Transcript (Including UTRs)
   Position: hg19 chr5:55,230,923-55,290,791 Size: 59,869 Total Exon Count: 17 Strand: -
Coding Region
   Position: hg19 chr5:55,236,910-55,272,106 Size: 35,197 Coding Exon Count: 15 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr5:55,230,923-55,290,791)mRNA (may differ from genome)Protein (918 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: IL6RB_HUMAN
DESCRIPTION: RecName: Full=Interleukin-6 receptor subunit beta; Short=IL-6 receptor subunit beta; Short=IL-6R subunit beta; Short=IL-6R-beta; Short=IL-6RB; AltName: Full=CDw130; AltName: Full=Interleukin-6 signal transducer; AltName: Full=Membrane glycoprotein 130; Short=gp130; AltName: Full=Oncostatin-M receptor subunit alpha; AltName: CD_antigen=CD130; Flags: Precursor;
FUNCTION: Signal-transducing molecule. The receptor systems for IL6, LIF, OSM, CNTF, IL11, CTF1 and BSF3 can utilize gp130 for initiating signal transmission. Binds to IL6/IL6R (alpha chain) complex, resulting in the formation of high-affinity IL6 binding sites, and transduces the signal. Does not bind IL6. May have a role in embryonic development (By similarity). The type I OSM receptor is capable of transducing OSM-specific signaling events.
SUBUNIT: Interacts with INPP5D/SHIP1 (By similarity). Forms heterodimers composed of LIPR and IL6ST (type I OSM receptor). Also forms heterodimers composed of OSMR and IL6ST (type II OSM receptor). Homodimer. The homodimer binds two molecules of herpes virus IL6. Component of a hexamer of two molecules each of IL6, IL6R and IL6ST. Interacts with HCK.
INTERACTION: P42227:Stat3 (xeno); NbExp=2; IntAct=EBI-1030834, EBI-602878;
SUBCELLULAR LOCATION: Isoform 1: Cell membrane; Single-pass type I membrane protein.
SUBCELLULAR LOCATION: Isoform 2: Secreted.
TISSUE SPECIFICITY: Found in all the tissues and cell lines examined. Expression not restricted to IL6 responsive cells.
INDUCTION: LIF and OSM activate the type I OSM receptor while only OSM can activate the type II OSM receptor.
DOMAIN: The WSXWS motif appears to be necessary for proper protein folding and thereby efficient intracellular transport and cell- surface receptor binding.
DOMAIN: The box 1 motif is required for JAK interaction and/or activation.
PTM: Phosphorylation of Ser-782 down-regulates cell surface expression.
PTM: Heavily N-glycosylated.
SIMILARITY: Belongs to the type I cytokine receptor family. Type 2 subfamily.
SIMILARITY: Contains 5 fibronectin type-III domains.
SIMILARITY: Contains 1 Ig-like C2-type (immunoglobulin-like) domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: IL6ST
Diseases sorted by gene-association score: kaposi sarcoma (30), hepatocellular adenoma (10), conjunctival disease (9), leukemia (7), plasmacytoma (7), human herpesvirus 8 (6), preterm premature rupture of the membranes (6), breast carcinoma in situ (4), rheumatoid arthritis (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 79.68 RPKM in Cells - Cultured fibroblasts
Total median expression: 1372.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -114.90283-0.406 Picture PostScript Text
3' UTR -1396.505987-0.233 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003961 - Fibronectin_type3
IPR003529 - Hematopoietin_rcpt_Gp130_CS
IPR013783 - Ig-like_fold
IPR010457 - IgC2-like_lig-bd
IPR015321 - IL6_recept-bd

Pfam Domains:
PF00041 - Fibronectin type III domain
PF06328 - Ig-like C2-type domain
PF09067 - Erythropoietin receptor, ligand binding
PF09240 - Interleukin-6 receptor alpha chain, binding

SCOP Domains:
48726 - Immunoglobulin
49265 - Fibronectin type III

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1BJ8 - NMR MuPIT 1BQU - X-ray MuPIT 1I1R - X-ray MuPIT 1N2Q - Model 1P9M - X-ray MuPIT 1PVH - X-ray MuPIT 3L5H - X-ray MuPIT 3L5I - X-ray MuPIT 3L5J - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P40189
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004896 cytokine receptor activity
GO:0004897 ciliary neurotrophic factor receptor activity
GO:0004921 interleukin-11 receptor activity
GO:0005127 ciliary neurotrophic factor receptor binding
GO:0005515 protein binding
GO:0019838 growth factor binding
GO:0019970 interleukin-11 binding
GO:0042803 protein homodimerization activity
GO:0045509 interleukin-27 receptor activity
GO:0004915 interleukin-6 receptor activity
GO:0004923 leukemia inhibitory factor receptor activity
GO:0004924 oncostatin-M receptor activity
GO:0005138 interleukin-6 receptor binding
GO:0019981 interleukin-6 binding

Biological Process:
GO:0002675 positive regulation of acute inflammatory response
GO:0002821 positive regulation of adaptive immune response
GO:0005977 glycogen metabolic process
GO:0007165 signal transduction
GO:0008284 positive regulation of cell proliferation
GO:0008593 regulation of Notch signaling pathway
GO:0010575 positive regulation of vascular endothelial growth factor production
GO:0010613 positive regulation of cardiac muscle hypertrophy
GO:0016032 viral process
GO:0019221 cytokine-mediated signaling pathway
GO:0034097 response to cytokine
GO:0038154 interleukin-11-mediated signaling pathway
GO:0038165 oncostatin-M-mediated signaling pathway
GO:0042102 positive regulation of T cell proliferation
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein
GO:0043066 negative regulation of apoptotic process
GO:0045669 positive regulation of osteoblast differentiation
GO:0048711 positive regulation of astrocyte differentiation
GO:0048861 leukemia inhibitory factor signaling pathway
GO:0070102 interleukin-6-mediated signaling pathway
GO:0070104 negative regulation of interleukin-6-mediated signaling pathway
GO:0070106 interleukin-27-mediated signaling pathway
GO:0070120 ciliary neurotrophic factor-mediated signaling pathway
GO:0070757 interleukin-35-mediated signaling pathway

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005886 plasma membrane
GO:0005896 interleukin-6 receptor complex
GO:0005900 oncostatin-M receptor complex
GO:0009897 external side of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030425 dendrite
GO:0043025 neuronal cell body
GO:0044297 cell body
GO:0070062 extracellular exosome
GO:0070110 ciliary neurotrophic factor receptor complex


-  Descriptions from all associated GenBank mRNAs
  LF384954 - JP 2014500723-A/192457: Polycomb-Associated Non-Coding RNAs.
JD024693 - Sequence 5717 from Patent EP1572962.
JD025998 - Sequence 7022 from Patent EP1572962.
JD030168 - Sequence 11192 from Patent EP1572962.
JD031122 - Sequence 12146 from Patent EP1572962.
AL049265 - Homo sapiens mRNA; cDNA DKFZp564F053 (from clone DKFZp564F053).
AB074172 - Homo sapiens primary neuroblastoma cDNA, clone:Nbla10111, full insert sequence.
LF332668 - JP 2014500723-A/140171: Polycomb-Associated Non-Coding RNAs.
LF332667 - JP 2014500723-A/140170: Polycomb-Associated Non-Coding RNAs.
BC071555 - Homo sapiens cDNA clone IMAGE:4374041, containing frame-shift errors.
LF332666 - JP 2014500723-A/140169: Polycomb-Associated Non-Coding RNAs.
LF332663 - JP 2014500723-A/140166: Polycomb-Associated Non-Coding RNAs.
LF332662 - JP 2014500723-A/140165: Polycomb-Associated Non-Coding RNAs.
LF332661 - JP 2014500723-A/140164: Polycomb-Associated Non-Coding RNAs.
LF332659 - JP 2014500723-A/140162: Polycomb-Associated Non-Coding RNAs.
LF332658 - JP 2014500723-A/140161: Polycomb-Associated Non-Coding RNAs.
LF332657 - JP 2014500723-A/140160: Polycomb-Associated Non-Coding RNAs.
LF332655 - JP 2014500723-A/140158: Polycomb-Associated Non-Coding RNAs.
JD554411 - Sequence 535435 from Patent EP1572962.
JD305124 - Sequence 286148 from Patent EP1572962.
JD250671 - Sequence 231695 from Patent EP1572962.
BC117402 - Homo sapiens interleukin 6 signal transducer (gp130, oncostatin M receptor), mRNA (cDNA clone MGC:151011 IMAGE:40125953), complete cds.
BC117404 - Homo sapiens interleukin 6 signal transducer (gp130, oncostatin M receptor), mRNA (cDNA clone MGC:151013 IMAGE:40125955), complete cds.
BC143842 - Homo sapiens cDNA clone IMAGE:9052357, with apparent retained intron.
JD501875 - Sequence 482899 from Patent EP1572962.
M57230 - Human membrane glycoprotein gp130 mRNA, complete cds.
E03329 - cDNA encoding which participates in signal transmission of IL-6.
E06613 - cDNA encoding human gp130 protein.
AB102802 - Homo sapiens IL6ST mRNA for IL6ST nirs variant 4, complete cds.
HQ628629 - Homo sapiens IL6ST isoform 3 (IL6ST) mRNA, complete cds, alternatively spliced.
HQ628630 - Homo sapiens IL6ST isoform 4 (IL6ST) mRNA, complete cds, alternatively spliced.
HQ258523 - Synthetic construct Homo sapiens clone IMAGE:100072952 interleukin 6 signal transducer (gp130, oncostatin M receptor) (IL6ST), transcript variant 1 (IL6ST) gene, encodes complete protein.
AB385123 - Synthetic construct DNA, clone: pF1KB5571, Homo sapiens IL6ST gene for interleukin-6 receptor subunit beta precursor, complete cds, without stop codon, in Flexi system.
JD294926 - Sequence 275950 from Patent EP1572962.
LF332654 - JP 2014500723-A/140157: Polycomb-Associated Non-Coding RNAs.
JD297118 - Sequence 278142 from Patent EP1572962.
JD206988 - Sequence 188012 from Patent EP1572962.
JD274090 - Sequence 255114 from Patent EP1572962.
JD375087 - Sequence 356111 from Patent EP1572962.
JD491497 - Sequence 472521 from Patent EP1572962.
JD394348 - Sequence 375372 from Patent EP1572962.
JD520246 - Sequence 501270 from Patent EP1572962.
LF332653 - JP 2014500723-A/140156: Polycomb-Associated Non-Coding RNAs.
JD375147 - Sequence 356171 from Patent EP1572962.
JD048523 - Sequence 29547 from Patent EP1572962.
S80479 - gp130=LIF receptor/IL-6 receptor complex component {alternatively spliced} [human, preimplantation embryos, blastocysts, mRNA Partial, 150 nt].
AB102801 - Homo sapiens IL6ST mRNA for IL6ST nirs variant 3, complete cds.
AB102804 - Homo sapiens IL6ST mRNA for IL6ST nirs variant 6, complete cds.
LF332652 - JP 2014500723-A/140155: Polycomb-Associated Non-Coding RNAs.
AB015706 - Homo sapiens mRNA for gp130 of the rheumatoid arthritis antigenic peptide-bearing soluble form (gp130-RAPS), complete cds.
U58146 - Homo sapiens alternatively spliced interleukin-6 receptor beta chain mRNA, partial cds.
LF332650 - JP 2014500723-A/140153: Polycomb-Associated Non-Coding RNAs.
JD069017 - Sequence 50041 from Patent EP1572962.
JD090818 - Sequence 71842 from Patent EP1572962.
JD307366 - Sequence 288390 from Patent EP1572962.
JD511185 - Sequence 492209 from Patent EP1572962.
JD502682 - Sequence 483706 from Patent EP1572962.
LF332646 - JP 2014500723-A/140149: Polycomb-Associated Non-Coding RNAs.
AB102803 - Homo sapiens IL6ST mRNA for IL6ST nirs variant 5, complete cds.
LF332644 - JP 2014500723-A/140147: Polycomb-Associated Non-Coding RNAs.
AB102799 - Homo sapiens IL6ST mRNA for IL6ST nirs variant 1, complete cds.
LF332642 - JP 2014500723-A/140145: Polycomb-Associated Non-Coding RNAs.
LF332639 - JP 2014500723-A/140142: Polycomb-Associated Non-Coding RNAs.
LF332638 - JP 2014500723-A/140141: Polycomb-Associated Non-Coding RNAs.
AB102800 - Homo sapiens IL6ST mRNA for IL6ST nirs variant 2, complete cds.
JD036588 - Sequence 17612 from Patent EP1572962.
JD405044 - Sequence 386068 from Patent EP1572962.
MA620531 - JP 2018138019-A/192457: Polycomb-Associated Non-Coding RNAs.
MA568244 - JP 2018138019-A/140170: Polycomb-Associated Non-Coding RNAs.
MA568243 - JP 2018138019-A/140169: Polycomb-Associated Non-Coding RNAs.
MA568240 - JP 2018138019-A/140166: Polycomb-Associated Non-Coding RNAs.
MA568239 - JP 2018138019-A/140165: Polycomb-Associated Non-Coding RNAs.
MA568238 - JP 2018138019-A/140164: Polycomb-Associated Non-Coding RNAs.
MA568236 - JP 2018138019-A/140162: Polycomb-Associated Non-Coding RNAs.
MA568235 - JP 2018138019-A/140161: Polycomb-Associated Non-Coding RNAs.
MA568234 - JP 2018138019-A/140160: Polycomb-Associated Non-Coding RNAs.
MA568232 - JP 2018138019-A/140158: Polycomb-Associated Non-Coding RNAs.
MA568231 - JP 2018138019-A/140157: Polycomb-Associated Non-Coding RNAs.
MA568230 - JP 2018138019-A/140156: Polycomb-Associated Non-Coding RNAs.
MA568229 - JP 2018138019-A/140155: Polycomb-Associated Non-Coding RNAs.
MA568227 - JP 2018138019-A/140153: Polycomb-Associated Non-Coding RNAs.
MA568223 - JP 2018138019-A/140149: Polycomb-Associated Non-Coding RNAs.
MA568221 - JP 2018138019-A/140147: Polycomb-Associated Non-Coding RNAs.
MA568219 - JP 2018138019-A/140145: Polycomb-Associated Non-Coding RNAs.
MA568216 - JP 2018138019-A/140142: Polycomb-Associated Non-Coding RNAs.
MA568215 - JP 2018138019-A/140141: Polycomb-Associated Non-Coding RNAs.
MA568245 - JP 2018138019-A/140171: Polycomb-Associated Non-Coding RNAs.
MB483354 - JP 2019528312-A/15: MRNA-MEDIATED IMMUNIZATION METHODS.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_il6Pathway - IL 6 signaling pathway
h_her2Pathway - Role of ERBB2 in Signal Transduction and Oncology

Reactome (by CSHL, EBI, and GO)

Protein P40189 (Reactome details) participates in the following event(s):

R-NUL-1067645 Jaks associate with IL6RB (gp130)
R-HSA-1067646 JAK1,JAK2,(TYK2) bind IL6ST
R-HSA-6783524 OSM,LIF,CTF1 receptor complex binds gp130
R-HSA-448427 Interleukin-27 binds Interleukin-27 receptor
R-HSA-449976 IL11:IL11RA binds IL6ST:JAK1,JAK2,(TYK2)
R-HSA-1067651 IL6:IL6R-2 binds IL6ST:JAK1, JAK2, (TYK2)
R-HSA-1067688 IL6:IL6R binds IL6ST:JAK1,JAK2,(TYK2)
R-HSA-6783530 gp130:JAKs bind CNTFR
R-HSA-8950210 Interleukin-27 dissociates from Interleukin-27 receptor
R-HSA-6783556 LIFR:JAKs bind gp130:JAKs:CNTFR
R-HSA-1067659 Assembly of hexameric IL-6 receptor
R-HSA-1059683 Interleukin-6 signaling
R-HSA-9020956 Interleukin-27 signaling
R-HSA-6788467 IL-6-type cytokine receptor ligand interactions
R-HSA-8984722 Interleukin-35 Signalling
R-HSA-6783589 Interleukin-6 family signaling
R-HSA-447115 Interleukin-12 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System
R-HSA-1067676 IL6:IL6R-2 binds IL6ST-2
R-HSA-1059683 Interleukin-6 signaling
R-HSA-6783589 Interleukin-6 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System
R-HSA-1112565 Tyrosine phosphorylated IL6ST binds STAT1,STAT3
R-HSA-1112708 PTPN11 binds p-Y759-IL6ST
R-HSA-1112755 SOCS3 binds IL6ST
R-HSA-1112604 Phosphorylated STATs are released
R-HSA-1112602 Tyrosine phosphorylation of STAT1, STAT3 by IL6 receptor
R-HSA-1112703 PTPN11 is phosphorylated
R-HSA-1112690 PTPN11 binds CBL
R-HSA-1059683 Interleukin-6 signaling
R-HSA-6783589 Interleukin-6 family signaling
R-HSA-449147 Signaling by Interleukins
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A0N0L4, ENST00000381298.1, ENST00000381298.2, ENST00000381298.3, ENST00000381298.4, ENST00000381298.5, ENST00000381298.6, IL6RB_HUMAN, IL6ST , NR_120480, P40189, Q5FC04, Q9UQ41, uc318qef.1, uc318qef.2
UCSC ID: ENST00000381298.7_7
RefSeq Accession: NM_002184.4
Protein: P40189 (aka IL6RB_HUMAN or IL6B_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.