Human Gene INPP5B (ENST00000373024.8_11) from GENCODE V47lift37
  Description: inositol polyphosphate-5-phosphatase B, transcript variant 13 (from RefSeq NR_158630.1)
Gencode Transcript: ENST00000373024.8_11
Gencode Gene: ENSG00000204084.14_18
Transcript (Including UTRs)
   Position: hg19 chr1:38,326,369-38,412,725 Size: 86,357 Total Exon Count: 24 Strand: -
Coding Region
   Position: hg19 chr1:38,327,987-38,411,980 Size: 83,994 Coding Exon Count: 23 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:38,326,369-38,412,725)mRNA (may differ from genome)Protein (913 aa)
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: I5P2_HUMAN
DESCRIPTION: RecName: Full=Type II inositol 1,4,5-trisphosphate 5-phosphatase; EC=3.1.3.36; AltName: Full=75 kDa inositol polyphosphate-5-phosphatase; AltName: Full=Phosphoinositide 5-phosphatase; Short=5PTase;
FUNCTION: Hydrolyzes phosphatidylinositol 4,5-bisphosphate (PtIns(4,5)P2) and the signaling molecule phosphatidylinositol 1,4,5-trisphosphate (PtIns(1,4,5)P3), and thereby modulates cellular signaling events.
CATALYTIC ACTIVITY: 1-phosphatidyl-1D-myo-inositol 4,5- bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 4-phosphate + phosphate.
SUBUNIT: Interacts with APPL1, FAM109A and FAM109B. Interacts with several Rab GTPases, at least RAB1A, RAB2A, RAB5A, RAB6A, RAB8A, RAB9A and RAB33B; these interactions may play a dual role in targeting INPP5B to the specific membranes and stimulating the phosphatase activity.
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Endoplasmic reticulum- Golgi intermediate compartment. Early endosome membrane. Membrane; Peripheral membrane protein; Cytoplasmic side. Cytoplasmic vesicle, phagosome membrane (By similarity). Golgi apparatus.
TISSUE SPECIFICITY: Platelets.
DOMAIN: The ASH (ASPM-SPD2-Hydin) and RhoGAP (Rho GTPase activating) domains form a single folding module. The ASH domain has an immunoglobulin-like fold, the Rho-GAP domain lacks the catalytic arginine and is catalytically inactive. The ASH-RhoGAP module regulates the majority of the protein-protein interactions currently described. The ASH domain mediates association with membrane-targeting Rab GTPases. The Rho-GAP domain interacts with the endocytic adapter APPL1, which is then displaced by FAM109A and FAM109B as endosomes mature, all three interactions relie on F&H motifs, an approximately 12-13 amino-acid sequence centered around Phe and His residues essential for binding (By similarity).
PTM: Isoprenylation at Cys-990 may be required for localization at the membrane.
PTM: May be proteolytically cleaved after Lys-320 as inferred from N-terminal protein sequence of the 75 kda form (PubMed:1718960).
SIMILARITY: Belongs to the inositol 1,4,5-trisphosphate 5- phosphatase type II family.
SIMILARITY: Contains 1 PH domain.
SIMILARITY: Contains 1 Rho-GAP domain.
SEQUENCE CAUTION: Sequence=AAA79207.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: INPP5B
Diseases sorted by gene-association score: lowe syndrome (15), x-linked disease (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.13 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 225.88 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -37.6090-0.418 Picture PostScript Text
3' UTR -678.501618-0.419 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR005135 - Endo/exonuclease/phosphatase
IPR000300 - IPPc
IPR008936 - Rho_GTPase_activation_prot
IPR000198 - RhoGAP_dom

Pfam Domains:
PF00620 - RhoGAP domain
PF03372 - Endonuclease/Exonuclease/phosphatase family
PF16776 - Type II inositol 1,4,5-trisphosphate 5-phosphatase PH domain

SCOP Domains:
48350 - GTPase activation domain, GAP
56219 - DNase I-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3MTC - X-ray MuPIT 3N9V - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on P32019
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologGenome BrowserNo ortholog
Gene DetailsGene Details  Gene Details 
Gene SorterGene Sorter  Gene Sorter 
 RGDEnsembl WormBase 
    Protein Sequence 
    Alignment 

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004439 phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity
GO:0005096 GTPase activator activity
GO:0005515 protein binding
GO:0016787 hydrolase activity
GO:0046872 metal ion binding
GO:0052658 inositol-1,4,5-trisphosphate 5-phosphatase activity
GO:0052659 inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity
GO:0052745 inositol phosphate phosphatase activity

Biological Process:
GO:0001701 in utero embryonic development
GO:0007165 signal transduction
GO:0007283 spermatogenesis
GO:0030317 flagellated sperm motility
GO:0043547 positive regulation of GTPase activity
GO:0043647 inositol phosphate metabolic process
GO:0046856 phosphatidylinositol dephosphorylation
GO:0051056 regulation of small GTPase mediated signal transduction
GO:0070613 regulation of protein processing

Cellular Component:
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment
GO:0005794 Golgi apparatus
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030670 phagocytic vesicle membrane
GO:0031410 cytoplasmic vesicle
GO:0031901 early endosome membrane


-  Descriptions from all associated GenBank mRNAs
  BC058932 - Homo sapiens inositol polyphosphate-5-phosphatase, 75kDa, mRNA (cDNA clone MGC:65156 IMAGE:5497202), complete cds.
BC062317 - Homo sapiens cDNA clone IMAGE:4871076, containing frame-shift errors.
M74161 - Human inositol polyphosphate 5-phosphatase (5ptase) mRNA, 3' end.
AK310824 - Homo sapiens cDNA, FLJ17866.
AL833055 - Homo sapiens mRNA; cDNA DKFZp666K059 (from clone DKFZp666K059).
BC042529 - Homo sapiens inositol polyphosphate-5-phosphatase, 75kDa, mRNA (cDNA clone IMAGE:4342775), partial cds.
JD495464 - Sequence 476488 from Patent EP1572962.
JD181593 - Sequence 162617 from Patent EP1572962.
JD176744 - Sequence 157768 from Patent EP1572962.
JD558649 - Sequence 539673 from Patent EP1572962.
JD326896 - Sequence 307920 from Patent EP1572962.
JD173748 - Sequence 154772 from Patent EP1572962.
JD265072 - Sequence 246096 from Patent EP1572962.
JD327191 - Sequence 308215 from Patent EP1572962.
JD545853 - Sequence 526877 from Patent EP1572962.
JD449363 - Sequence 430387 from Patent EP1572962.
JD267895 - Sequence 248919 from Patent EP1572962.
JD466388 - Sequence 447412 from Patent EP1572962.
JD430838 - Sequence 411862 from Patent EP1572962.
JD266442 - Sequence 247466 from Patent EP1572962.
JD327694 - Sequence 308718 from Patent EP1572962.
JD185851 - Sequence 166875 from Patent EP1572962.
JD048176 - Sequence 29200 from Patent EP1572962.
JD247040 - Sequence 228064 from Patent EP1572962.
JD413462 - Sequence 394486 from Patent EP1572962.
JD198155 - Sequence 179179 from Patent EP1572962.
JD212760 - Sequence 193784 from Patent EP1572962.
JD542782 - Sequence 523806 from Patent EP1572962.
JD083018 - Sequence 64042 from Patent EP1572962.
JD184768 - Sequence 165792 from Patent EP1572962.
JD126408 - Sequence 107432 from Patent EP1572962.
JD055404 - Sequence 36428 from Patent EP1572962.
JD295374 - Sequence 276398 from Patent EP1572962.
JD165832 - Sequence 146856 from Patent EP1572962.
JD475670 - Sequence 456694 from Patent EP1572962.
JD342325 - Sequence 323349 from Patent EP1572962.
JD119909 - Sequence 100933 from Patent EP1572962.
JD348862 - Sequence 329886 from Patent EP1572962.
JD243008 - Sequence 224032 from Patent EP1572962.
JD509615 - Sequence 490639 from Patent EP1572962.
JD225440 - Sequence 206464 from Patent EP1572962.
JD418653 - Sequence 399677 from Patent EP1572962.
JD132783 - Sequence 113807 from Patent EP1572962.
JD070736 - Sequence 51760 from Patent EP1572962.
JD514198 - Sequence 495222 from Patent EP1572962.
JD322274 - Sequence 303298 from Patent EP1572962.
JD213140 - Sequence 194164 from Patent EP1572962.
JD542940 - Sequence 523964 from Patent EP1572962.
JD293416 - Sequence 274440 from Patent EP1572962.
JD562183 - Sequence 543207 from Patent EP1572962.
JD262543 - Sequence 243567 from Patent EP1572962.
JD476910 - Sequence 457934 from Patent EP1572962.
JD480804 - Sequence 461828 from Patent EP1572962.
JD342551 - Sequence 323575 from Patent EP1572962.
JD156348 - Sequence 137372 from Patent EP1572962.
JD397830 - Sequence 378854 from Patent EP1572962.
JD229321 - Sequence 210345 from Patent EP1572962.
JD426557 - Sequence 407581 from Patent EP1572962.
JD322258 - Sequence 303282 from Patent EP1572962.
JD227710 - Sequence 208734 from Patent EP1572962.
JD161700 - Sequence 142724 from Patent EP1572962.
JD153339 - Sequence 134363 from Patent EP1572962.
JD198501 - Sequence 179525 from Patent EP1572962.
JD272084 - Sequence 253108 from Patent EP1572962.
JD026755 - Sequence 7779 from Patent EP1572962.
AK022846 - Homo sapiens cDNA FLJ12784 fis, clone NT2RP2001898, highly similar to Type II inositol-1,4,5-trisphosphate 5-phosphatase precursor (EC 3.1.3.36).
JD036316 - Sequence 17340 from Patent EP1572962.
JD295107 - Sequence 276131 from Patent EP1572962.
JD428953 - Sequence 409977 from Patent EP1572962.
JD132847 - Sequence 113871 from Patent EP1572962.
JD320141 - Sequence 301165 from Patent EP1572962.
JD364942 - Sequence 345966 from Patent EP1572962.
JD042941 - Sequence 23965 from Patent EP1572962.
JD062160 - Sequence 43184 from Patent EP1572962.
JD372023 - Sequence 353047 from Patent EP1572962.
JD040244 - Sequence 21268 from Patent EP1572962.
JD298170 - Sequence 279194 from Patent EP1572962.
JD088845 - Sequence 69869 from Patent EP1572962.
JD048804 - Sequence 29828 from Patent EP1572962.
JD171854 - Sequence 152878 from Patent EP1572962.
JD193695 - Sequence 174719 from Patent EP1572962.
JD185092 - Sequence 166116 from Patent EP1572962.
JD086738 - Sequence 67762 from Patent EP1572962.
JD168343 - Sequence 149367 from Patent EP1572962.
JD279663 - Sequence 260687 from Patent EP1572962.
JD335713 - Sequence 316737 from Patent EP1572962.
JD226304 - Sequence 207328 from Patent EP1572962.
JD155238 - Sequence 136262 from Patent EP1572962.
JD427763 - Sequence 408787 from Patent EP1572962.
JD528019 - Sequence 509043 from Patent EP1572962.
JD494276 - Sequence 475300 from Patent EP1572962.
AK295062 - Homo sapiens cDNA FLJ52126 complete cds, highly similar to Type II inositol-1,4,5-trisphosphate 5-phosphatase precursor (EC 3.1.3.36).
JD346298 - Sequence 327322 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-6358 - superpathway of D-myo-inositol (1,4,5)-trisphosphate metabolism
PWY-6362 - 1D-myo-inositol hexakisphosphate biosynthesis II (mammalian)
PWY-6363 - D-myo-inositol (1,4,5)-trisphosphate degradation
PWY-6364 - D-myo-inositol (1,3,4)-trisphosphate biosynthesis
PWY-6368 - 3-phosphoinositide degradation
PWY-6371 - superpathway of inositol phosphate compounds

Reactome (by CSHL, EBI, and GO)

Protein P32019 (Reactome details) participates in the following event(s):

R-HSA-194922 GAPs inactivate Rho GTPase:GTP by hydrolysis
R-HSA-1855222 I(1,4,5)P3 is dephosphorylated to I(1,4)P2 by INPP5A/B at the plasma membrane
R-HSA-1855213 I(1,3,4,5)P4 is dephosphorylated to I(1,3,4)P3 by INPP5B at the plasma membrane
R-HSA-194840 Rho GTPase cycle
R-HSA-1855183 Synthesis of IP2, IP, and Ins in the cytosol
R-HSA-1855204 Synthesis of IP3 and IP4 in the cytosol
R-HSA-194315 Signaling by Rho GTPases
R-HSA-1483249 Inositol phosphate metabolism
R-HSA-162582 Signal Transduction
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: C9J6U5, ENST00000373024.1, ENST00000373024.2, ENST00000373024.3, ENST00000373024.4, ENST00000373024.5, ENST00000373024.6, ENST00000373024.7, I5P2_HUMAN, NR_158630, OCRL2, P32019, Q5VSG9, Q5VSH0, Q5VSH1, Q658Q5, Q6P6D4, Q6PD53, Q86YE1, uc318kko.1, uc318kko.2
UCSC ID: ENST00000373024.8_11
RefSeq Accession: NM_005540.3
Protein: P32019 (aka I5P2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.