Human Gene LAMB4 (ENST00000388781.8_8) from GENCODE V47lift37
  Description: laminin subunit beta 4, transcript variant 1 (from RefSeq NM_007356.3)
Gencode Transcript: ENST00000388781.8_8
Gencode Gene: ENSG00000091128.13_14
Transcript (Including UTRs)
   Position: hg19 chr7:107,663,998-107,770,806 Size: 106,809 Total Exon Count: 34 Strand: -
Coding Region
   Position: hg19 chr7:107,664,484-107,763,609 Size: 99,126 Coding Exon Count: 33 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr7:107,663,998-107,770,806)mRNA (may differ from genome)Protein (1761 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: LAMB4_HUMAN
DESCRIPTION: RecName: Full=Laminin subunit beta-4; AltName: Full=Laminin beta-1-related protein; Flags: Precursor;
FUNCTION: Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organization of cells into tissues during embryonic development by interacting with other extracellular matrix components.
SUBUNIT: Laminin is a complex glycoprotein, consisting of three different polypeptide chains (alpha, beta, gamma), which are bound to each other by disulfide bonds into a cross-shaped molecule comprising one long and three short arms with globules at each end.
SUBCELLULAR LOCATION: Secreted, extracellular space, extracellular matrix, basement membrane.
DOMAIN: The alpha-helical domains I and II are thought to interact with other laminin chains to form a coiled coil structure.
DOMAIN: Domains VI and IV are globular.
SIMILARITY: Contains 13 laminin EGF-like domains.
SIMILARITY: Contains 1 laminin IV type B domain.
SIMILARITY: Contains 1 laminin N-terminal domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: LAMB4
Diseases sorted by gene-association score: diverticulitis (5)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 16.24 RPKM in Skin - Not Sun Exposed (Suprapubic)
Total median expression: 35.43 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -5.1089-0.057 Picture PostScript Text
3' UTR -100.74486-0.207 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013032 - EGF-like_CS
IPR002049 - EGF_laminin
IPR013015 - Laminin_IV
IPR008211 - Laminin_N

Pfam Domains:
PF00053 - Laminin EGF domain
PF00055 - Laminin N-terminal (Domain VI)

SCOP Domains:
49785 - Galactose-binding domain-like
57196 - EGF/Laminin
57997 - Tropomyosin

ModBase Predicted Comparative 3D Structure on A4D0S4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
      
      
      
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Biological Process:
GO:0007155 cell adhesion

Cellular Component:
GO:0005576 extracellular region
GO:0005604 basement membrane


-  Descriptions from all associated GenBank mRNAs
  AF028816 - Homo sapiens laminin beta-4 chain precursor (LAMB4) mRNA, alternatively spliced, complete cds.
BC144591 - Homo sapiens laminin, beta 4, mRNA (cDNA clone MGC:178138 IMAGE:9053121), complete cds.
BC140804 - Homo sapiens laminin, beta 4, mRNA (cDNA clone MGC:176481 IMAGE:9021672), complete cds.
AK300385 - Homo sapiens cDNA FLJ61398 complete cds, highly similar to Homo sapiens laminin, beta 4 (LAMB4), mRNA.
BC142619 - Homo sapiens laminin, beta 4, mRNA (cDNA clone IMAGE:40147414), complete cds.
JD429233 - Sequence 410257 from Patent EP1572962.
JD254426 - Sequence 235450 from Patent EP1572962.
AK075165 - Homo sapiens cDNA FLJ90684 fis, clone PLACE1006071.
JD042257 - Sequence 23281 from Patent EP1572962.
JD344613 - Sequence 325637 from Patent EP1572962.
JD049637 - Sequence 30661 from Patent EP1572962.
BC045172 - Homo sapiens laminin, beta 4, mRNA (cDNA clone IMAGE:5272604), partial cds.
AK301777 - Homo sapiens cDNA FLJ50052 complete cds, highly similar to Homo sapiens laminin, beta 4 (LAMB4), mRNA.
AF029325 - Homo sapiens laminin beta-4 chain precursor (LAMB4) mRNA, alternatively spliced short variant, partial cds.
JD249268 - Sequence 230292 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A4D0S4, A5PKU6, B2RTT3, B5MEB9, ENST00000388781.1, ENST00000388781.2, ENST00000388781.3, ENST00000388781.4, ENST00000388781.5, ENST00000388781.6, ENST00000388781.7, LAMB4_HUMAN, NM_007356, Q86TP7, Q86XN2, Q8NBX5, uc318szy.1, uc318szy.2
UCSC ID: ENST00000388781.8_8
RefSeq Accession: NM_007356.3
Protein: A4D0S4 (aka LAMB4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.