Human Gene LPAR3 (ENST00000370611.4_8) from GENCODE V47lift37
  Description: lysophosphatidic acid receptor 3 (from RefSeq NM_012152.3)
Gencode Transcript: ENST00000370611.4_8
Gencode Gene: ENSG00000171517.6_10
Transcript (Including UTRs)
   Position: hg19 chr1:85,277,285-85,358,889 Size: 81,605 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr1:85,279,529-85,331,803 Size: 52,275 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:85,277,285-85,358,889)mRNA (may differ from genome)Protein (353 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: LPAR3_HUMAN
DESCRIPTION: RecName: Full=Lysophosphatidic acid receptor 3; Short=LPA receptor 3; Short=LPA-3; AltName: Full=Lysophosphatidic acid receptor Edg-7;
FUNCTION: Receptor for lysophosphatidic acid (LPA), a mediator of diverse cellular activities. May play a role in the development of ovarian cancer. Seems to be coupled to the G(i)/G(o) and G(q) families of heteromeric G proteins.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Most abundantly expressed in prostate, testes, pancreas, and heart, with moderate levels in lung and ovary. No detectable expression in brain, placenta, liver, skeletal muscle, kidney, spleen, thymus, small intestine, colon, or peripheral blood leukocytes.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 7.42 RPKM in Testis
Total median expression: 54.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -109.30209-0.523 Picture PostScript Text
3' UTR -617.302244-0.275 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam
IPR004065 - LPA_rcpt
IPR005385 - LPA_rcpt_EDG7

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on Q9UBY5
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001965 G-protein alpha-subunit binding
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0005543 phospholipid binding
GO:0008289 lipid binding
GO:0070915 lysophosphatidic acid receptor activity

Biological Process:
GO:0000187 activation of MAPK activity
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007187 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger
GO:0007204 positive regulation of cytosolic calcium ion concentration
GO:0007268 chemical synaptic transmission
GO:0032060 bleb assembly
GO:0043410 positive regulation of MAPK cascade
GO:0048672 positive regulation of collateral sprouting
GO:0051482 positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway
GO:0051928 positive regulation of calcium ion transport

Cellular Component:
GO:0005886 plasma membrane
GO:0005887 integral component of plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane
GO:0030424 axon


-  Descriptions from all associated GenBank mRNAs
  AK308283 - Homo sapiens cDNA, FLJ98231.
BC126268 - Homo sapiens lysophosphatidic acid receptor 3, mRNA (cDNA clone MGC:161546 IMAGE:8991984), complete cds.
BC126270 - Homo sapiens lysophosphatidic acid receptor 3, mRNA (cDNA clone MGC:161548 IMAGE:8991986), complete cds.
BC144021 - Homo sapiens cDNA clone IMAGE:9052541, containing frame-shift errors.
AF127138 - Homo sapiens lysophosphatidic acid G protein-coupled receptor (EDG7) mRNA, complete cds.
AF186380 - Homo sapiens calcium-mobilizing lysophosphatidic acid receptor LP-A3/Edg-7 mRNA, complete cds.
AF236117 - Homo sapiens G-protein coupled receptor EDG-7 mRNA, complete cds.
AY322547 - Homo sapiens endothelial differentiation G-protein-coupled receptor 7 mRNA, complete cds.
KJ898513 - Synthetic construct Homo sapiens clone ccsbBroadEn_07907 LPAR3 gene, encodes complete protein.
AK091731 - Homo sapiens cDNA FLJ34412 fis, clone HEART2002432.
JD526669 - Sequence 507693 from Patent EP1572962.
JD375412 - Sequence 356436 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_akap13Pathway - Rho-Selective Guanine Exchange Factor AKAP13 Mediates Stress Fiber Formation

Reactome (by CSHL, EBI, and GO)

Protein Q9UBY5 (Reactome details) participates in the following event(s):

R-HSA-419389 LPA-binding receptors bind LPA
R-HSA-749454 The Ligand:GPCR:Gi complex dissociates
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749456 Liganded Gi-activating GPCRs bind inactive heterotrimeric G-protein Gi
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-380073 Liganded Gi-activating GPCR acts as a GEF for Gi
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-419408 Lysosphingolipid and LPA receptors
R-HSA-418594 G alpha (i) signalling events
R-HSA-416476 G alpha (q) signalling events
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A0AVA3, EDG7, ENST00000370611.1, ENST00000370611.2, ENST00000370611.3, LPA3, LPAR3_HUMAN, NM_012152, Q9UBY5, uc318imv.1, uc318imv.2
UCSC ID: ENST00000370611.4_8
RefSeq Accession: NM_012152.3
Protein: Q9UBY5 (aka LPAR3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.