Human Gene MAGED4B (ENST00000335504.10_9) from GENCODE V47lift37
  Description: MAGE family member D4B, transcript variant 1 (from RefSeq NM_030801.5)
Gencode Transcript: ENST00000335504.10_9
Gencode Gene: ENSG00000187243.17_18
Transcript (Including UTRs)
   Position: hg19 chrX:51,804,923-51,812,279 Size: 7,357 Total Exon Count: 13 Strand: -
Coding Region
   Position: hg19 chrX:51,805,125-51,811,268 Size: 6,144 Coding Exon Count: 12 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:51,804,923-51,812,279)mRNA (may differ from genome)Protein (741 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MalacardsMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MAGD4_HUMAN
DESCRIPTION: RecName: Full=Melanoma-associated antigen D4; AltName: Full=MAGE-D4 antigen; AltName: Full=MAGE-E1 antigen;
FUNCTION: May enhance ubiquitin ligase activity of RING-type zinc finger-containing E3 ubiquitin-protein ligases. Proposed to act through recruitment and/or stabilization of the Ubl-conjugating enzyme (E2) at the E3:substrate complex.
SUBUNIT: Interacts with TRIM27.
TISSUE SPECIFICITY: Expressed only in brain and ovary among normal tissues. Isoform 1 and isoform 2 are specifically expressed in glioma cells among cancer cells. Detected in some renal cell carcinoma samples.
SIMILARITY: Contains 1 MAGE domain.
SEQUENCE CAUTION: Sequence=AAH01207.1; Type=Erroneous initiation; Sequence=AAL50032.1; Type=Frameshift; Positions=186, 219; Sequence=BAB47488.2; Type=Erroneous initiation;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MAGED4B
Diseases sorted by gene-association score: glioma (7), melanoma (4)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 0.12 RPKM in Pituitary
Total median expression: 0.77 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -36.5085-0.429 Picture PostScript Text
3' UTR -49.40202-0.245 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR002190 - MAGE

Pfam Domains:
PF01454 - MAGE family

ModBase Predicted Comparative 3D Structure on Q96JG8
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
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-  Descriptions from all associated GenBank mRNAs
  AK094541 - Homo sapiens cDNA FLJ37222 fis, clone BRAMY1000130, highly similar to Homo sapiens MAGE-E1b mRNA.
BC063838 - Homo sapiens melanoma antigen family D, 4B, mRNA (cDNA clone MGC:74882 IMAGE:6185437), complete cds.
BC081566 - Homo sapiens melanoma antigen family D, 4B, mRNA (cDNA clone MGC:88639 IMAGE:6292139), complete cds.
AL136582 - Homo sapiens mRNA; cDNA DKFZp761N1924 (from clone DKFZp761N1924).
AB040527 - Homo sapiens MAGE-E1a mRNA, complete cds.
AB040528 - Homo sapiens MAGE-E1b mRNA, complete cds.
AB040529 - Homo sapiens MAGE-E1c mRNA, complete cds.
BC001207 - Homo sapiens melanoma antigen family D, 4B, mRNA (cDNA clone IMAGE:3502168), complete cds.
AK098830 - Homo sapiens cDNA FLJ25964 fis, clone CBR01704.
AB058762 - Homo sapiens KIAA1859 mRNA for KIAA1859 protein.
JD297298 - Sequence 278322 from Patent EP1572962.
AF329733 - Homo sapiens MAGED4 protein (MAGED4) mRNA, complete cds.
JD400313 - Sequence 381337 from Patent EP1572962.
JD530368 - Sequence 511392 from Patent EP1572962.
JD332630 - Sequence 313654 from Patent EP1572962.
JD146200 - Sequence 127224 from Patent EP1572962.
JD190089 - Sequence 171113 from Patent EP1572962.
JD361359 - Sequence 342383 from Patent EP1572962.
AK289458 - Homo sapiens cDNA FLJ76324 complete cds, highly similar to Homo sapiens melanoma antigen family D, 4 (MAGED4), transcript variant 1, mRNA.
JD117892 - Sequence 98916 from Patent EP1572962.
KJ903324 - Synthetic construct Homo sapiens clone ccsbBroadEn_12718 MAGED4B gene, encodes complete protein.
AB384309 - Synthetic construct DNA, clone: pF1KSDA1859, Homo sapiens MAGD4 gene for melanoma-associated antigen D4, complete cds, without stop codon, in Flexi system.
CU674606 - Synthetic construct Homo sapiens gateway clone IMAGE:100018978 5' read MAGED4 mRNA.
JD371441 - Sequence 352465 from Patent EP1572962.
JD458071 - Sequence 439095 from Patent EP1572962.
AF320908 - Homo sapiens MAGE-D4 (MAGED4) mRNA, partial cds.
JD199721 - Sequence 180745 from Patent EP1572962.
AK308365 - Homo sapiens cDNA, FLJ98313.
JD206427 - Sequence 187451 from Patent EP1572962.
JD462788 - Sequence 443812 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A8K093, ENST00000335504.1, ENST00000335504.2, ENST00000335504.3, ENST00000335504.4, ENST00000335504.5, ENST00000335504.6, ENST00000335504.7, ENST00000335504.8, ENST00000335504.9, KIAA1859, MAGD4_HUMAN, MAGED4, MAGED4A, MAGEE1, NM_030801, Q5HYN6, Q8WXW4, Q96JG8, Q9BQ84, Q9BVH1, Q9BYH3, Q9BYH4, Q9H217, uc317uha.1, uc317uha.2
UCSC ID: ENST00000335504.10_9
RefSeq Accession: NM_030801.5
Protein: Q96JG8 (aka MAGD4_HUMAN or MGD4_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.