Human Gene MAP1A (ENST00000300231.6_8) from GENCODE V47lift37
  Description: microtubule associated protein 1A (from RefSeq NM_002373.6)
Gencode Transcript: ENST00000300231.6_8
Gencode Gene: ENSG00000166963.13_12
Transcript (Including UTRs)
   Position: hg19 chr15:43,809,806-43,823,809 Size: 14,004 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr15:43,813,672-43,822,422 Size: 8,751 Coding Exon Count: 3 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr15:43,809,806-43,823,809)mRNA (may differ from genome)Protein (2803 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MAP1A_HUMAN
DESCRIPTION: RecName: Full=Microtubule-associated protein 1A; Short=MAP-1A; AltName: Full=Proliferation-related protein p80; Contains: RecName: Full=MAP1A heavy chain; Contains: RecName: Full=MAP1 light chain LC2;
FUNCTION: Structural protein involved in the filamentous cross- bridging between microtubules and other skeletal elements.
SUBUNIT: 3 different light chains, LC1, LC2 and LC3, can associate with MAP1A and MAP1B proteins. Interacts with TIAM2. Interacts with guanylate kinase-like domain of DLG1, DLG2, DLG4. Binds to CSNK1D (By similarity).
INTERACTION: Q9NRI5:DISC1; NbExp=3; IntAct=EBI-929047, EBI-529989;
SUBCELLULAR LOCATION: Cytoplasm, cytoskeleton (Probable).
TISSUE SPECIFICITY: Brain.
DOMAIN: The basic region containing the repeats may be responsible for the binding of MAP1A to microtubules.
PTM: Phosphorylated by CSNK1D (By similarity). Phosphorylated upon DNA damage, probably by ATM or ATR.
PTM: LC2 is generated from MAP1A by proteolytic processing.
SIMILARITY: Belongs to the MAP1 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 112.57 RPKM in Brain - Cortex
Total median expression: 1023.73 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -144.90467-0.310 Picture PostScript Text
3' UTR -483.101387-0.348 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026074 - MAP1

SCOP Domains:
56281 - Metallo-hydrolase/oxidoreductase

ModBase Predicted Comparative 3D Structure on P78559
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003779 actin binding
GO:0005198 structural molecule activity
GO:0005515 protein binding
GO:0008017 microtubule binding
GO:0008093 cytoskeletal adaptor activity
GO:0015631 tubulin binding

Biological Process:
GO:0000226 microtubule cytoskeleton organization
GO:0007613 memory
GO:0008306 associative learning
GO:0032435 negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0048167 regulation of synaptic plasticity
GO:0099641 anterograde axonal protein transport
GO:0099642 retrograde axonal protein transport
GO:1903829 positive regulation of cellular protein localization
GO:2000010 positive regulation of protein localization to cell surface

Cellular Component:
GO:0005737 cytoplasm
GO:0005856 cytoskeleton
GO:0005874 microtubule
GO:0005875 microtubule associated complex
GO:0030424 axon
GO:0043198 dendritic shaft
GO:0044307 dendritic branch
GO:1904115 axon cytoplasm


-  Descriptions from all associated GenBank mRNAs
  AK291052 - Homo sapiens cDNA FLJ77111 partial cds, highly similar to Homo sapiens microtubule-associated protein 1A (MAP1A), mRNA.
BC055312 - Homo sapiens microtubule-associated protein 1A, mRNA (cDNA clone IMAGE:4092022), partial cds.
BC094702 - Homo sapiens microtubule-associated protein 1A, mRNA (cDNA clone IMAGE:30717647), partial cds.
BC010470 - Homo sapiens microtubule-associated protein 1A, mRNA (cDNA clone IMAGE:4179668), with apparent retained intron.
JD249193 - Sequence 230217 from Patent EP1572962.
JD229495 - Sequence 210519 from Patent EP1572962.
JD261596 - Sequence 242620 from Patent EP1572962.
AF200415 - Homo sapiens proliferation-related protein P80 mRNA, partial cds.
JD130442 - Sequence 111466 from Patent EP1572962.
JD239971 - Sequence 220995 from Patent EP1572962.
JD396920 - Sequence 377944 from Patent EP1572962.
JD456731 - Sequence 437755 from Patent EP1572962.
GU014838 - Synthetic construct Homo sapiens clone IMAGE:100068742; MGC:198456 microtubule-associated protein 1A (MAP1A) gene, encodes complete protein.
U38292 - Human microtubule-associated protein 1a (MAP1A) mRNA, complete cds.
U80458 - Human microtubule associated protein 1A mRNA, partial cds.
AF095910 - Homo sapiens microtubule-associated protein 1A like protein (M1LP) mRNA, partial cds.
U14577 - Human microtubule-associated protein 1A (MAP1A) mRNA, complete cds.
BC104426 - Homo sapiens cDNA clone IMAGE:40013744.
BC104427 - Homo sapiens cDNA clone IMAGE:40013745.
JD252910 - Sequence 233934 from Patent EP1572962.
JD079960 - Sequence 60984 from Patent EP1572962.
JD444117 - Sequence 425141 from Patent EP1572962.
JD347827 - Sequence 328851 from Patent EP1572962.
JD503456 - Sequence 484480 from Patent EP1572962.
JD215686 - Sequence 196710 from Patent EP1572962.
JD055627 - Sequence 36651 from Patent EP1572962.
JD414112 - Sequence 395136 from Patent EP1572962.
JD064151 - Sequence 45175 from Patent EP1572962.
JD066043 - Sequence 47067 from Patent EP1572962.
JD090313 - Sequence 71337 from Patent EP1572962.
JD093857 - Sequence 74881 from Patent EP1572962.
JD085987 - Sequence 67011 from Patent EP1572962.
JD115590 - Sequence 96614 from Patent EP1572962.
JD084045 - Sequence 65069 from Patent EP1572962.
JD221541 - Sequence 202565 from Patent EP1572962.
JD467844 - Sequence 448868 from Patent EP1572962.
JD467436 - Sequence 448460 from Patent EP1572962.
JD442295 - Sequence 423319 from Patent EP1572962.
JD168378 - Sequence 149402 from Patent EP1572962.
JD368767 - Sequence 349791 from Patent EP1572962.
JD075400 - Sequence 56424 from Patent EP1572962.
JD302904 - Sequence 283928 from Patent EP1572962.
JD048635 - Sequence 29659 from Patent EP1572962.
JD355211 - Sequence 336235 from Patent EP1572962.
JD338587 - Sequence 319611 from Patent EP1572962.
JD048410 - Sequence 29434 from Patent EP1572962.
JD120913 - Sequence 101937 from Patent EP1572962.
JD361227 - Sequence 342251 from Patent EP1572962.
JD103395 - Sequence 84419 from Patent EP1572962.
JD048654 - Sequence 29678 from Patent EP1572962.
JD521061 - Sequence 502085 from Patent EP1572962.
JD148910 - Sequence 129934 from Patent EP1572962.
JD516408 - Sequence 497432 from Patent EP1572962.
JD365926 - Sequence 346950 from Patent EP1572962.
JD150361 - Sequence 131385 from Patent EP1572962.
JD554609 - Sequence 535633 from Patent EP1572962.
JD490887 - Sequence 471911 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000300231.1, ENST00000300231.2, ENST00000300231.3, ENST00000300231.4, ENST00000300231.5, MAP1A_HUMAN, MAP1L, NM_002373, O95643, P78559, Q12973, Q15882, Q9UJT4, uc317moq.1, uc317moq.2
UCSC ID: ENST00000300231.6_8
RefSeq Accession: NM_002373.6
Protein: P78559 (aka MAP1A_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.