Human Gene MAPKAPK3 (ENST00000621469.5_5) from GENCODE V47lift37
  Description: MAPK activated protein kinase 3, transcript variant 3 (from RefSeq NM_004635.5)
Gencode Transcript: ENST00000621469.5_5
Gencode Gene: ENSG00000114738.11_10
Transcript (Including UTRs)
   Position: hg19 chr3:50,654,582-50,686,722 Size: 32,141 Total Exon Count: 11 Strand: +
Coding Region
   Position: hg19 chr3:50,654,997-50,685,477 Size: 30,481 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr3:50,654,582-50,686,722)mRNA (may differ from genome)Protein (382 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MAPK3_HUMAN
DESCRIPTION: RecName: Full=MAP kinase-activated protein kinase 3; Short=MAPK-activated protein kinase 3; Short=MAPKAP kinase 3; Short=MAPKAP-K3; Short=MAPKAPK-3; Short=MK-3; EC=2.7.11.1; AltName: Full=Chromosome 3p kinase; Short=3pK;
FUNCTION: Stress-activated serine/threonine-protein kinase involved in cytokines production, endocytosis, cell migration, chromatin remodeling and transcriptional regulation. Following stress, it is phosphorylated and activated by MAP kinase p38- alpha/MAPK14, leading to phosphorylation of substrates. Phosphorylates serine in the peptide sequence, Hyd-X-R-X(2)-S, where Hyd is a large hydrophobic residue. MAPKAPK2 and MAPKAPK3, share the same function and substrate specificity, but MAPKAPK3 kinase activity and level in protein expression are lower compared to MAPKAPK2. Phosphorylates HSP27/HSPB1, KRT18, KRT20, RCSD1, RPS6KA3, TAB3 and TTP/ZFP36. Mediates phosphorylation of HSP27/HSPB1 in response to stress, leading to dissociate HSP27/HSPB1 from large small heat-shock protein (sHsps) oligomers and impair their chaperone activities and ability to protect against oxidative stress effectively. Involved in inflammatory response by regulating tumor necrosis factor (TNF) and IL6 production post-transcriptionally: acts by phosphorylating AU-rich elements (AREs)-binding proteins, such as TTP/ZFP36, leading to regulate the stability and translation of TNF and IL6 mRNAs. Phosphorylation of TTP/ZFP36, a major post-transcriptional regulator of TNF, promotes its binding to 14-3-3 proteins and reduces its ARE mRNA affinity leading to inhibition of dependent degradation of ARE-containing transcript. Involved in toll-like receptor signaling pathway (TLR) in dendritic cells: required for acute TLR-induced macropinocytosis by phosphorylating and activating RPS6KA3. Also acts as a modulator of Polycomb-mediated repression.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Activated following phosphorylation by p38- alpha/MAPK14 following various stresses. Inhibited by ligand 5B (2'-[2-(1,3-benzodioxol-5-yl)pyrimidin-4-yl]-5',6'- dihydrospiro[piperidine-4,7'-pyrrolo[3,2-c]pyridin]- 4'(1'h)-one) and ligand P4O (2-[2-(2-fluorophenyl)pyridin-4-yl]-1,5,6,7- tetrahydro- 4h-pyrrolo[3,2-c]pyridin-4-one), 2 ATP-competitive inhibitors.
SUBUNIT: Heterodimer with p38-alpha/MAPK14. The heterodimer with p38-alpha/MAPK14 forms a stable complex: molecules are positioned 'face to face' so that the ATP-binding sites of both kinases are at the heterodimer interface (By similarity). Interacts with TCF3 and with polycomb proteins, such as PCH2 and BMI1/PCGF4.
INTERACTION: P04792:HSPB1; NbExp=2; IntAct=EBI-1384657, EBI-352682;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Note=Predominantly located in the nucleus, when activated it translocates to the cytoplasm.
TISSUE SPECIFICITY: Widely expressed, with a higher expression level observed in heart and skeletal muscle. No expression in brain.
PTM: Phosphorylated and activated by MAPK1/ERK2 and MAPK3/ERK1. Phosphorylated and activated by MAP kinase p38-alpha/MAPK14 at Thr-201, Ser-251 and Thr-313 (By similarity).
SIMILARITY: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

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To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MAPKAPK3
Diseases sorted by gene-association score: macular dystrophy, patterned, 3* (1637), interstitial myocarditis (17), immature cataract (16), patterned macular dystrophy (13), endemic typhus (9), congenital nonspherocytic hemolytic anemia (7), mediastinitis (6), retinitis pigmentosa (1)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -64.10143-0.448 Picture PostScript Text
3' UTR -518.101245-0.416 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF06293 - Lipopolysaccharide kinase (Kdo/WaaP) family
PF07714 - Protein tyrosine and serine/threonine kinase

SCOP Domains:
56112 - Protein kinase-like (PK-like)

Protein Data Bank (PDB) 3-D Structure
MuPIT help
3FHR - X-ray MuPIT 3FXW - X-ray MuPIT 3R1N - X-ray MuPIT 3SHE - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q16644
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004683 calmodulin-dependent protein kinase activity
GO:0004708 MAP kinase kinase activity
GO:0005515 protein binding
GO:0005516 calmodulin binding
GO:0005524 ATP binding
GO:0009931 calcium-dependent protein serine/threonine kinase activity
GO:0016301 kinase activity
GO:0016740 transferase activity
GO:0051019 mitogen-activated protein kinase binding

Biological Process:
GO:0000165 MAPK cascade
GO:0000187 activation of MAPK activity
GO:0002224 toll-like receptor signaling pathway
GO:0006468 protein phosphorylation
GO:0007165 signal transduction
GO:0007166 cell surface receptor signaling pathway
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0032496 response to lipopolysaccharide
GO:0034097 response to cytokine
GO:0044351 macropinocytosis
GO:0046777 protein autophosphorylation
GO:0048010 vascular endothelial growth factor receptor signaling pathway

Cellular Component:
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  BC068497 - Homo sapiens mitogen-activated protein kinase-activated protein kinase 3, mRNA (cDNA clone IMAGE:4823572).
AK290969 - Homo sapiens cDNA FLJ78027 complete cds, highly similar to Homo sapiens mitogen-activated protein kinase-activated protein kinase 3, mRNA.
BC001662 - Homo sapiens mitogen-activated protein kinase-activated protein kinase 3, mRNA (cDNA clone MGC:1497 IMAGE:2988489), complete cds.
BC010407 - Homo sapiens mitogen-activated protein kinase-activated protein kinase 3, mRNA (cDNA clone MGC:15263 IMAGE:3833667), complete cds.
BC007591 - Homo sapiens mitogen-activated protein kinase-activated protein kinase 3, mRNA (cDNA clone MGC:15642 IMAGE:3345889), complete cds.
U09578 - Homo sapiens MAPKAP kinase (3pK) mRNA, complete cds.
AK313565 - Homo sapiens cDNA, FLJ94129, highly similar to Homo sapiens mitogen-activated protein kinase-activated protein kinase 3 (MAPKAPK3), mRNA.
JD045965 - Sequence 26989 from Patent EP1572962.
U43784 - Human mitogen activated protein kinase activated protein kinase-3 mRNA, complete cds.
AB528893 - Synthetic construct DNA, clone: pF1KE0650, Homo sapiens MAPKAPK3 gene for mitogen-activated protein kinase-activated protein kinase 3, without stop codon, in Flexi system.
EU832627 - Synthetic construct Homo sapiens clone HAIB:100067656; DKFZo008C0931 mitogen-activated protein kinase-activated protein kinase 3 protein (MAPKAPK3) gene, encodes complete protein.
EU832702 - Synthetic construct Homo sapiens clone HAIB:100067731; DKFZo004C0932 mitogen-activated protein kinase-activated protein kinase 3 protein (MAPKAPK3) gene, encodes complete protein.
CU675717 - Synthetic construct Homo sapiens gateway clone IMAGE:100019172 5' read MAPKAPK3 mRNA.
HQ447828 - Synthetic construct Homo sapiens clone IMAGE:100071171; CCSB005270_01 mitogen-activated protein kinase-activated protein kinase 3 (MAPKAPK3) gene, encodes complete protein.
KJ892442 - Synthetic construct Homo sapiens clone ccsbBroadEn_01836 MAPKAPK3 gene, encodes complete protein.
KJ905344 - Synthetic construct Homo sapiens clone ccsbBroadEn_14887 MAPKAPK3 gene, encodes complete protein.
AB451434 - Homo sapiens MAPKAPK3 mRNA for mitogen-activated protein kinase-activated protein kinase 3, partial cds, clone: FLJ08159AAAF.
AB451303 - Homo sapiens MAPKAPK3 mRNA for mitogen-activated protein kinase-activated protein kinase 3, complete cds, clone: FLJ08159AAAN.
JD124564 - Sequence 105588 from Patent EP1572962.
JD131430 - Sequence 112454 from Patent EP1572962.
JD541550 - Sequence 522574 from Patent EP1572962.
JD156515 - Sequence 137539 from Patent EP1572962.
JD459596 - Sequence 440620 from Patent EP1572962.
JD213666 - Sequence 194690 from Patent EP1572962.
JD449930 - Sequence 430954 from Patent EP1572962.
JD195476 - Sequence 176500 from Patent EP1572962.
JD495394 - Sequence 476418 from Patent EP1572962.
JD530936 - Sequence 511960 from Patent EP1572962.
JD477986 - Sequence 459010 from Patent EP1572962.
JD183783 - Sequence 164807 from Patent EP1572962.
JD412635 - Sequence 393659 from Patent EP1572962.
JD325157 - Sequence 306181 from Patent EP1572962.
JD488325 - Sequence 469349 from Patent EP1572962.
JD136737 - Sequence 117761 from Patent EP1572962.
JD281854 - Sequence 262878 from Patent EP1572962.
JD336255 - Sequence 317279 from Patent EP1572962.
JD195529 - Sequence 176553 from Patent EP1572962.
JD104436 - Sequence 85460 from Patent EP1572962.
JD130636 - Sequence 111660 from Patent EP1572962.
JD101379 - Sequence 82403 from Patent EP1572962.
JD566589 - Sequence 547613 from Patent EP1572962.
JD538975 - Sequence 519999 from Patent EP1572962.
JD315974 - Sequence 296998 from Patent EP1572962.
JD054188 - Sequence 35212 from Patent EP1572962.
JD146949 - Sequence 127973 from Patent EP1572962.
JD263656 - Sequence 244680 from Patent EP1572962.
JD152800 - Sequence 133824 from Patent EP1572962.
JD527164 - Sequence 508188 from Patent EP1572962.
JD426494 - Sequence 407518 from Patent EP1572962.
JD255644 - Sequence 236668 from Patent EP1572962.
JD248271 - Sequence 229295 from Patent EP1572962.
JD242262 - Sequence 223286 from Patent EP1572962.
JD536942 - Sequence 517966 from Patent EP1572962.
JD419959 - Sequence 400983 from Patent EP1572962.
JD069533 - Sequence 50557 from Patent EP1572962.
JD466265 - Sequence 447289 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCarta from NCI Cancer Genome Anatomy Project
h_hsp27Pathway - Stress Induction of HSP Regulation
h_mapkPathway - MAPKinase Signaling Pathway

Reactome (by CSHL, EBI, and GO)

Protein Q16644 (Reactome details) participates in the following event(s):

R-HSA-187688 p38 MAPK phosphorylates MAPKAPK2, MAPKAPK3
R-HSA-450257 Nuclear export of human p38 MAPK mediated by its substrate MAPKAPK2 or 3
R-HSA-450222 Active p38 MAPK phosphorylates MAPKAPK2 or 3
R-HSA-450333 Activated human MKK3/MKK6 phosphorylates p38 MAPK complexed with MAPKAPK2 or MAPKAPK3
R-HSA-3229102 p-MAPKAPK3 phosphorylates BMI1
R-HSA-171007 p38MAPK events
R-HSA-4420097 VEGFA-VEGFR2 Pathway
R-HSA-450302 activated TAK1 mediates p38 MAPK activation
R-HSA-167044 Signalling to RAS
R-HSA-194138 Signaling by VEGF
R-HSA-2559580 Oxidative Stress Induced Senescence
R-HSA-450294 MAP kinase activation
R-HSA-187687 Signalling to ERKs
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-2559583 Cellular Senescence
R-HSA-166058 MyD88:Mal cascade initiated on plasma membrane
R-HSA-168164 Toll Like Receptor 3 (TLR3) Cascade
R-HSA-448424 Interleukin-17 signaling
R-HSA-937061 TRIF(TICAM1)-mediated TLR4 signaling
R-HSA-975138 TRAF6 mediated induction of NFkB and MAP kinases upon TLR7/8 or 9 activation
R-HSA-975871 MyD88 cascade initiated on plasma membrane
R-HSA-187037 Signaling by NTRK1 (TRKA)
R-HSA-162582 Signal Transduction
R-HSA-2262752 Cellular responses to stress
R-HSA-166016 Toll Like Receptor 4 (TLR4) Cascade
R-HSA-168179 Toll Like Receptor TLR1:TLR2 Cascade
R-HSA-168188 Toll Like Receptor TLR6:TLR2 Cascade
R-HSA-168898 Toll-Like Receptors Cascades
R-HSA-449147 Signaling by Interleukins
R-HSA-166166 MyD88-independent TLR4 cascade
R-HSA-975155 MyD88 dependent cascade initiated on endosome
R-HSA-168142 Toll Like Receptor 10 (TLR10) Cascade
R-HSA-168176 Toll Like Receptor 5 (TLR5) Cascade
R-HSA-166520 Signaling by NTRKs
R-HSA-8953897 Cellular responses to external stimuli
R-HSA-181438 Toll Like Receptor 2 (TLR2) Cascade
R-HSA-168249 Innate Immune System
R-HSA-1280215 Cytokine Signaling in Immune system
R-HSA-168138 Toll Like Receptor 9 (TLR9) Cascade
R-HSA-168181 Toll Like Receptor 7/8 (TLR7/8) Cascade
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: B5BU67, ENST00000621469.1, ENST00000621469.2, ENST00000621469.3, ENST00000621469.4, MAPK3_HUMAN, NM_004635, Q16644, uc327tqx.1, uc327tqx.2
UCSC ID: ENST00000621469.5_5
RefSeq Accession: NM_001243925.2
Protein: Q16644 (aka MAPK3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.