Human Gene MPHOSPH6 (ENST00000258169.9_7) from GENCODE V47lift37
  Description: M-phase phosphoprotein 6 (from RefSeq NM_005792.2)
Gencode Transcript: ENST00000258169.9_7
Gencode Gene: ENSG00000135698.10_9
Transcript (Including UTRs)
   Position: hg19 chr16:82,181,767-82,203,829 Size: 22,063 Total Exon Count: 5 Strand: -
Coding Region
   Position: hg19 chr16:82,182,336-82,203,780 Size: 21,445 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:82,181,767-82,203,829)mRNA (may differ from genome)Protein (160 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: MPH6_HUMAN
DESCRIPTION: RecName: Full=M-phase phosphoprotein 6;
FUNCTION: RNA-binding protein that associates with the RNA exosome complex. Involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA and may play a role in recruiting the RNA exosome complex to pre-rRNA; this function may include C1D.
SUBUNIT: Associates with the RNA exosome complex, probably mediated by EXOSC10. Interacts with ARHGAP18, EXOSC10 and SKIV2L2.
INTERACTION: Q01780:EXOSC10; NbExp=4; IntAct=EBI-373187, EBI-358236; Q13868:EXOSC2; NbExp=3; IntAct=EBI-373187, EBI-301735; P42285:SKIV2L2; NbExp=2; IntAct=EBI-373187, EBI-347612;
SUBCELLULAR LOCATION: Nucleus, nucleolus. Cytoplasm. Note=Cytoplasmic in M phase.
PTM: Phosphorylated in M (mitotic) phase.
SIMILARITY: Belongs to the MPP6 family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 11.66 RPKM in Esophagus - Mucosa
Total median expression: 377.09 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -17.8049-0.363 Picture PostScript Text
3' UTR -121.70569-0.214 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR019324 - MPP6

Pfam Domains:
PF10175 - M-phase phosphoprotein 6

ModBase Predicted Comparative 3D Structure on Q99547
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0003723 RNA binding
GO:0005515 protein binding

Biological Process:
GO:0000460 maturation of 5.8S rRNA
GO:0006364 rRNA processing

Cellular Component:
GO:0000178 exosome (RNase complex)
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0000176 nuclear exosome (RNase complex)


-  Descriptions from all associated GenBank mRNAs
  BC005242 - Homo sapiens M-phase phosphoprotein 6, mRNA (cDNA clone MGC:12270 IMAGE:3997566), complete cds.
BC011020 - Homo sapiens M-phase phosphoprotein 6, mRNA (cDNA clone MGC:13538 IMAGE:4287267), complete cds.
X98263 - H.sapiens mRNA for M-phase phosphoprotein, mpp6.
BC031017 - Homo sapiens M-phase phosphoprotein 6, mRNA (cDNA clone MGC:32786 IMAGE:4670801), complete cds.
AK222667 - Homo sapiens mRNA for M-phase phosphoprotein 6 variant, clone: CBR02251.
JD550744 - Sequence 531768 from Patent EP1572962.
JD384534 - Sequence 365558 from Patent EP1572962.
JD315164 - Sequence 296188 from Patent EP1572962.
JD049221 - Sequence 30245 from Patent EP1572962.
JD184590 - Sequence 165614 from Patent EP1572962.
JD220391 - Sequence 201415 from Patent EP1572962.
JD428857 - Sequence 409881 from Patent EP1572962.
AK314163 - Homo sapiens cDNA, FLJ94873, Homo sapiens M-phase phosphoprotein 6 (MPHOSPH6), mRNA.
CU689076 - Synthetic construct Homo sapiens gateway clone IMAGE:100022073 5' read MPHOSPH6 mRNA.
HQ447909 - Synthetic construct Homo sapiens clone IMAGE:100071265; CCSB005511_03 M-phase phosphoprotein 6 (MPHOSPH6) gene, encodes complete protein.
KJ898172 - Synthetic construct Homo sapiens clone ccsbBroadEn_07566 MPHOSPH6 gene, encodes complete protein.
KJ898173 - Synthetic construct Homo sapiens clone ccsbBroadEn_07567 MPHOSPH6 gene, encodes complete protein.
AB463897 - Synthetic construct DNA, clone: pF1KB8268, Homo sapiens MPHOSPH6 gene for M-phase phosphoprotein 6, without stop codon, in Flexi system.
BC029395 - Homo sapiens M-phase phosphoprotein 6, mRNA (cDNA clone IMAGE:4603429), complete cds.
KJ906026 - Synthetic construct Homo sapiens clone ccsbBroadEn_15696 MPHOSPH6 gene, encodes complete protein.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q99547 (Reactome details) participates in the following event(s):

R-HSA-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-HSA-8868773 rRNA processing in the nucleus and cytosol
R-HSA-72312 rRNA processing
R-HSA-8953854 Metabolism of RNA

-  Other Names for This Gene
  Alternate Gene Symbols: B2RAF0, ENST00000258169.1, ENST00000258169.2, ENST00000258169.3, ENST00000258169.4, ENST00000258169.5, ENST00000258169.6, ENST00000258169.7, ENST00000258169.8, MPH6_HUMAN, MPHOSPH6 , MPP6 , NM_005792, Q99547, uc317gbl.1, uc317gbl.2
UCSC ID: ENST00000258169.9_7
RefSeq Accession: NM_005792.2
Protein: Q99547 (aka MPH6_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.