Human Gene MYO18B (ENST00000335473.12_13) from GENCODE V47lift37
  Description: myosin XVIIIB, transcript variant 2 (from RefSeq NM_032608.7)
Gencode Transcript: ENST00000335473.12_13
Gencode Gene: ENSG00000133454.16_16
Transcript (Including UTRs)
   Position: hg19 chr22:26,138,155-26,427,011 Size: 288,857 Total Exon Count: 44 Strand: +
Coding Region
   Position: hg19 chr22:26,157,060-26,423,644 Size: 266,585 Coding Exon Count: 42 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr22:26,138,155-26,427,011)mRNA (may differ from genome)Protein (2567 aa)
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-  Comments and Description Text from UniProtKB
  ID: MY18B_HUMAN
DESCRIPTION: RecName: Full=Unconventional myosin-XVIIIb;
FUNCTION: May be involved in intracellular trafficking of the muscle cell when in the cytoplasm, whereas entering the nucleus, may be involved in the regulation of muscle specific genes. May play a role in the control of tumor development and progression; restored MYO18B expression in lung cancer cells suppresses anchorage-independent growth.
SUBUNIT: Homodimer. May interact with F actin through the GPA motif (Gly/Pro/Ala-rich).
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Cytoplasm, myofibril, sarcomere. Note=Punctate pattern in undifferentiated myoblasts. Nuclear, on primary cardiomyocytes and adult muscle. A partial sarcomeric location was found in some cardiomyocytes.
TISSUE SPECIFICITY: Selectively expressed in cardiac and skeletal muscles. Weakly expressed in testis, pancreas, placenta, prostate, lung and thymus.
DEVELOPMENTAL STAGE: Reaches an expression peak in the third day after induction and remains at similar level during successive myotubule maturation.
MISCELLANEOUS: Frequently deleted, mutated, and hypermethylated in lung cancers.
SIMILARITY: Contains 1 IQ domain.
SIMILARITY: Contains 1 myosin head-like domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: MYO18B
Diseases sorted by gene-association score: klippel-feil syndrome 4, autosomal recessive, with myopathy and facial dysmorphism* (1250), klippel-feil syndrome 4* (119), lung large cell carcinoma (7), lung cancer (3)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 54.80 RPKM in Muscle - Skeletal
Total median expression: 111.84 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -61.60215-0.287 Picture PostScript Text
3' UTR -181.70615-0.295 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000048 - IQ_motif_EF-hand-BS
IPR001609 - Myosin_head_motor_dom

Pfam Domains:
PF00063 - Myosin head (motor domain)
PF00612 - IQ calmodulin-binding motif

SCOP Domains:
52540 - P-loop containing nucleoside triphosphate hydrolases
57829 - Zn-binding ribosomal proteins

ModBase Predicted Comparative 3D Structure on Q8IUG5
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0003774 motor activity
GO:0003777 microtubule motor activity
GO:0003779 actin binding
GO:0005524 ATP binding
GO:0008017 microtubule binding

Biological Process:
GO:0007018 microtubule-based movement

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0016459 myosin complex
GO:0016461 unconventional myosin complex
GO:0030017 sarcomere


-  Descriptions from all associated GenBank mRNAs
  AB075376 - Homo sapiens mRNA for bk125H2.1, complete cds.
AJ310931 - Homo sapiens mRNA for myosin heavy chain (MYO18B gene).
AY077700 - Homo sapiens myosin-like protein mRNA, complete cds.
BC144596 - Homo sapiens cDNA clone IMAGE:9053126.
BC144597 - Homo sapiens myosin XVIIIB, mRNA (cDNA clone MGC:178144 IMAGE:9053127), complete cds.
BC150626 - Homo sapiens myosin XVIIIB, mRNA (cDNA clone MGC:183536 IMAGE:9056996), complete cds.
KJ903447 - Synthetic construct Homo sapiens clone ccsbBroadEn_12841 MYO18B gene, encodes complete protein.
AB042648 - Homo sapiens bk125H2.1 mRNA, complete cds.
CR749556 - Homo sapiens mRNA; cDNA DKFZp779C1668 (from clone DKFZp779C1668).
JD254505 - Sequence 235529 from Patent EP1572962.
JD038559 - Sequence 19583 from Patent EP1572962.
JD358029 - Sequence 339053 from Patent EP1572962.
JD400800 - Sequence 381824 from Patent EP1572962.
AK123936 - Homo sapiens cDNA FLJ41942 fis, clone PERIC2008008, highly similar to Homo sapiens bk125H2.1 mRNA.
AK095943 - Homo sapiens cDNA FLJ38624 fis, clone HEART2008994.
AJ271918 - Homo sapiens partial mRNA for hypothetical protein (ORF1), clone STRAIT06018.
AL833890 - Homo sapiens mRNA; cDNA DKFZp434C2422 (from clone DKFZp434C2422).
JD399080 - Sequence 380104 from Patent EP1572962.
JD316895 - Sequence 297919 from Patent EP1572962.
JD107269 - Sequence 88293 from Patent EP1572962.
JD460200 - Sequence 441224 from Patent EP1572962.
JD396312 - Sequence 377336 from Patent EP1572962.
JD190076 - Sequence 171100 from Patent EP1572962.
JD265282 - Sequence 246306 from Patent EP1572962.
JD258263 - Sequence 239287 from Patent EP1572962.
JD386386 - Sequence 367410 from Patent EP1572962.
JD377422 - Sequence 358446 from Patent EP1572962.
JD173202 - Sequence 154226 from Patent EP1572962.
JD368516 - Sequence 349540 from Patent EP1572962.
JD518337 - Sequence 499361 from Patent EP1572962.
JD049207 - Sequence 30231 from Patent EP1572962.
JD146871 - Sequence 127895 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A075B6F5, B2RWP3, ENST00000335473.1, ENST00000335473.10, ENST00000335473.11, ENST00000335473.2, ENST00000335473.3, ENST00000335473.4, ENST00000335473.5, ENST00000335473.6, ENST00000335473.7, ENST00000335473.8, ENST00000335473.9, F5GXR6, F5GYU7, MY18B_HUMAN, NM_032608, Q8IUG5, Q8NDI8, Q8TE65, Q8WWS0, Q96KH2, Q96KR8, Q96KR9, uc317ugq.1, uc317ugq.2
UCSC ID: ENST00000335473.12_13
RefSeq Accession: NM_032608.7
Protein: Q8IUG5 (aka MY18B_HUMAN or M18B_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.