Human Gene NDUFA12 (ENST00000327772.7_7) from GENCODE V47lift37
  Description: NADH:ubiquinone oxidoreductase subunit A12, transcript variant 1 (from RefSeq NM_018838.5)
Gencode Transcript: ENST00000327772.7_7
Gencode Gene: ENSG00000184752.14_10
Transcript (Including UTRs)
   Position: hg19 chr12:95,365,109-95,397,473 Size: 32,365 Total Exon Count: 4 Strand: -
Coding Region
   Position: hg19 chr12:95,365,216-95,397,456 Size: 32,241 Coding Exon Count: 4 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesGeneReviewsModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:95,365,109-95,397,473)mRNA (may differ from genome)Protein (145 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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-  Comments and Description Text from UniProtKB
  ID: NDUAC_HUMAN
DESCRIPTION: RecName: Full=NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12; AltName: Full=13 kDa differentiation-associated protein; AltName: Full=Complex I-B17.2; Short=CI-B17.2; Short=CIB17.2; AltName: Full=NADH-ubiquinone oxidoreductase subunit B17.2;
FUNCTION: Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
SUBUNIT: Complex I is composed of 45 different subunits.
SUBCELLULAR LOCATION: Mitochondrion inner membrane; Peripheral membrane protein; Matrix side.
DISEASE: Defects in NDUFA12 are the cause of Leigh syndrome (LS) [MIM:256000]. An early-onset progressive neurodegenerative disorder characterized by the presence of focal, bilateral lesions in one or more areas of the central nervous system including the brainstem, thalamus, basal ganglia, cerebellum and spinal cord. Clinical features depend on which areas of the central nervous system are involved and include subacute onset of psychomotor retardation, hypotonia, ataxia, weakness, vision loss, eye movement abnormalities, seizures, and dysphagia.
SIMILARITY: Belongs to the complex I NDUFA12 subunit family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: NDUFA12
Diseases sorted by gene-association score: leigh syndrome* (348), leigh syndrome with leukodystrophy* (76), placenta praevia (16), orbital cancer (16)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 51.59 RPKM in Heart - Left Ventricle
Total median expression: 987.99 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -3.9017-0.229 Picture PostScript Text
3' UTR -16.50107-0.154 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR007763 - NADH_UbQ_OxRdtase_17.2kDa_su

Pfam Domains:
PF05071 - NADH ubiquinone oxidoreductase subunit NDUFA12

ModBase Predicted Comparative 3D Structure on Q9UI09
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0008137 NADH dehydrogenase (ubiquinone) activity
GO:0009055 electron carrier activity

Biological Process:
GO:0006979 response to oxidative stress
GO:0007585 respiratory gaseous exchange
GO:0032981 mitochondrial respiratory chain complex I assembly
GO:0042775 mitochondrial ATP synthesis coupled electron transport
GO:0055114 oxidation-reduction process

Cellular Component:
GO:0005739 mitochondrion
GO:0005743 mitochondrial inner membrane
GO:0005747 mitochondrial respiratory chain complex I
GO:0005829 cytosol
GO:0016020 membrane
GO:0070469 respiratory chain


-  Descriptions from all associated GenBank mRNAs
  AF112208 - Homo sapiens 13kDa differentiation-associated protein mRNA, complete cds.
BC005936 - Homo sapiens NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12, mRNA (cDNA clone MGC:14554 IMAGE:4069306), complete cds.
AK222619 - Homo sapiens mRNA for 13kDa differentiation-associated protein variant, clone: CAS12232.
AF217092 - Homo sapiens NADH:ubiquinone oxidoreductase 17.2-kDa subunit mRNA, complete cds.
BT007220 - Homo sapiens 13kDa differentiation-associated protein mRNA, complete cds.
CU675197 - Synthetic construct Homo sapiens gateway clone IMAGE:100016697 5' read NDUFA12 mRNA.
KJ899220 - Synthetic construct Homo sapiens clone ccsbBroadEn_08614 NDUFA12 gene, encodes complete protein.
U34343 - Homo sapiens 13kD differentiation-associated protein mRNA, partial cds.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-3781 - aerobic respiration I (cytochrome c)

Reactome (by CSHL, EBI, and GO)

Protein Q9UI09 (Reactome details) participates in the following event(s):

R-HSA-6800870 NDUF subunits bind to form the FP subcomplex
R-HSA-6799179 Peripheral arm subunits bind the 815kDa complex to form a 980kDa complex
R-HSA-6799196 The MCIA complex, NDUFAF2-7 all dissociate from the 980kDa complex, resulting in Complex I
R-HSA-163217 Complex I oxidises NADH to NAD+, reduces CoQ to QH2
R-HSA-6799198 Complex I biogenesis
R-HSA-611105 Respiratory electron transport
R-HSA-163200 Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.
R-HSA-1428517 The citric acid (TCA) cycle and respiratory electron transport
R-HSA-1430728 Metabolism

-  Other Names for This Gene
  Alternate Gene Symbols: DAP13, ENST00000327772.1, ENST00000327772.2, ENST00000327772.3, ENST00000327772.4, ENST00000327772.5, ENST00000327772.6, F8VQS7, NDUAC_HUMAN, NM_018838, Q53XX0, Q9BRV6, Q9UI09, uc317siv.1, uc317siv.2
UCSC ID: ENST00000327772.7_7
RefSeq Accession: NM_018838.5
Protein: Q9UI09 (aka NDUAC_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene NDUFA12:
leigh-nucl-ov (Nuclear Gene-Encoded Leigh Syndrome Spectrum Overview)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.