Human Gene ODF2 (ENST00000351030.8_9) from GENCODE V47lift37
  Description: outer dense fiber of sperm tails 2, transcript variant 16 (from RefSeq NM_001351581.1)
Gencode Transcript: ENST00000351030.8_9
Gencode Gene: ENSG00000136811.17_18
Transcript (Including UTRs)
   Position: hg19 chr9:131,218,285-131,263,571 Size: 45,287 Total Exon Count: 21 Strand: +
Coding Region
   Position: hg19 chr9:131,218,371-131,262,534 Size: 44,164 Coding Exon Count: 21 

Page IndexSequence and LinksPrimersCTDGene AllelesRNA-Seq Expression
Microarray ExpressionRNA StructureOther SpeciesmRNA DescriptionsOther NamesModel Information
Methods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr9:131,218,285-131,263,571)mRNA (may differ from genome)Protein (912 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedUniProtKBWikipedia
BioGrid CRISPR DB

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 175.84 RPKM in Testis
Total median expression: 604.91 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -36.4086-0.423 Picture PostScript Text
3' UTR -283.401037-0.273 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGD    
      
      

-  Descriptions from all associated GenBank mRNAs
  AK301842 - Homo sapiens cDNA FLJ56168 complete cds, highly similar to Homo sapiens outer dense fiber of sperm tails 2 (ODF2), transcript variant 2, mRNA.
AK093367 - Homo sapiens cDNA FLJ36048 fis, clone TESTI2017954, highly similar to Homo sapiens outer dense fiber of sperm tails 2 (ODF2), transcript variant 2, mRNA.
AK301754 - Homo sapiens cDNA FLJ56166 complete cds, highly similar to Homo sapiens outer dense fiber of sperm tails 2 (ODF2), transcript variant 2, mRNA.
AY366499 - Homo sapiens outer dense fiber of sperm tails 2 (ODF2) mRNA, complete cds; alternatively spliced.
AK302684 - Homo sapiens cDNA FLJ55346 complete cds, highly similar to Homo sapiens outer dense fiber of sperm tails 2 (ODF2), transcript variant 1, mRNA.
HM005674 - Homo sapiens clone HTL-T-51e testis tissue sperm-binding protein Li 51e mRNA, complete cds.
AK300793 - Homo sapiens cDNA FLJ59435 complete cds, highly similar to Homo sapiens outer dense fiber of sperm tails 2 (ODF2), transcript variant 2, mRNA.
AK295662 - Homo sapiens cDNA FLJ59899 complete cds, moderately similar to Homo sapiens outer dense fiber of sperm tails 2 (ODF2), transcript variant 1, mRNA.
AK309917 - Homo sapiens cDNA, FLJ99958.
AK299303 - Homo sapiens cDNA FLJ55042 complete cds, highly similar to Homo sapiens outer dense fiber of sperm tails 2 (ODF2), transcript variant 1, mRNA.
BC010629 - Homo sapiens outer dense fiber of sperm tails 2, mRNA (cDNA clone MGC:9034 IMAGE:3874501), complete cds.
AK301855 - Homo sapiens cDNA FLJ56030 complete cds, highly similar to Homo sapiens outer dense fiber of sperm tails 2 (ODF2), transcript variant 2, mRNA.
AK308278 - Homo sapiens cDNA, FLJ98226.
BC091500 - Homo sapiens outer dense fiber of sperm tails 2, mRNA (cDNA clone MGC:111096 IMAGE:30378678), complete cds.
AF012549 - Homo sapiens outer dense fiber protein 2 (odf2) mRNA, complete cds.
AY319414 - Homo sapiens outer dense fiber of sperm tails 2 isoform 3 (ODF2) mRNA, complete cds.
EU832188 - Synthetic construct Homo sapiens clone HAIB:100067217; DKFZo004A0826 outer dense fiber of sperm tails 2 protein (ODF2) gene, encodes complete protein.
AF053970 - Homo sapiens outer dense fiber protein 2/2 mRNA, complete cds.
EU832198 - Synthetic construct Homo sapiens clone HAIB:100067227; DKFZo004B0626 outer dense fiber of sperm tails 2 protein (ODF2) gene, encodes complete protein.
EU832104 - Synthetic construct Homo sapiens clone HAIB:100067133; DKFZo008B0625 outer dense fiber of sperm tails 2 protein (ODF2) gene, encodes complete protein.
DQ444713 - Homo sapiens cenexin 1 variant 1 mRNA, complete cds, alternatively spliced.
DQ444714 - Homo sapiens cenexin 1 mRNA, complete cds.
CU679765 - Synthetic construct Homo sapiens gateway clone IMAGE:100020068 5' read ODF2 mRNA.
KJ901614 - Synthetic construct Homo sapiens clone ccsbBroadEn_11008 ODF2 gene, encodes complete protein.
LF205619 - JP 2014500723-A/13122: Polycomb-Associated Non-Coding RNAs.
DQ578249 - Homo sapiens piRNA piR-46361, complete sequence.
LF346582 - JP 2014500723-A/154085: Polycomb-Associated Non-Coding RNAs.
LF346583 - JP 2014500723-A/154086: Polycomb-Associated Non-Coding RNAs.
LF346585 - JP 2014500723-A/154088: Polycomb-Associated Non-Coding RNAs.
LF346586 - JP 2014500723-A/154089: Polycomb-Associated Non-Coding RNAs.
AK126816 - Homo sapiens cDNA FLJ44866 fis, clone BRALZ2014054.
BC012785 - Homo sapiens outer dense fiber of sperm tails 2, mRNA (cDNA clone IMAGE:3951577), partial cds.
JD140446 - Sequence 121470 from Patent EP1572962.
JD251822 - Sequence 232846 from Patent EP1572962.
JD068219 - Sequence 49243 from Patent EP1572962.
JD068024 - Sequence 49048 from Patent EP1572962.
JD357036 - Sequence 338060 from Patent EP1572962.
JD298534 - Sequence 279558 from Patent EP1572962.
JD049865 - Sequence 30889 from Patent EP1572962.
JD279444 - Sequence 260468 from Patent EP1572962.
JD488799 - Sequence 469823 from Patent EP1572962.
JD362884 - Sequence 343908 from Patent EP1572962.
JD348882 - Sequence 329906 from Patent EP1572962.
JD439810 - Sequence 420834 from Patent EP1572962.
MA582159 - JP 2018138019-A/154085: Polycomb-Associated Non-Coding RNAs.
MA582160 - JP 2018138019-A/154086: Polycomb-Associated Non-Coding RNAs.
MA582162 - JP 2018138019-A/154088: Polycomb-Associated Non-Coding RNAs.
MA582163 - JP 2018138019-A/154089: Polycomb-Associated Non-Coding RNAs.
MA441196 - JP 2018138019-A/13122: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: A0A8J8YVX4, A0A8J8YVX4_HUMAN, ENST00000351030.1, ENST00000351030.2, ENST00000351030.3, ENST00000351030.4, ENST00000351030.5, ENST00000351030.6, ENST00000351030.7, hCG_31640 , NM_001351581, ODF2 , uc317ybd.1, uc317ybd.2
UCSC ID: ENST00000351030.8_9
RefSeq Accession: NM_001351578.2

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.