Human Gene PIBF1 (ENST00000326291.11_4) from GENCODE V47lift37
  Description: progesterone immunomodulatory binding factor 1, transcript variant 4 (from RefSeq NR_146206.2)
Gencode Transcript: ENST00000326291.11_4
Gencode Gene: ENSG00000083535.16_8
Transcript (Including UTRs)
   Position: hg19 chr13:73,356,271-73,590,599 Size: 234,329 Total Exon Count: 18 Strand: +
Coding Region
   Position: hg19 chr13:73,357,608-73,590,057 Size: 232,450 Coding Exon Count: 17 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr13:73,356,271-73,590,599)mRNA (may differ from genome)Protein (757 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMalacardsMGIOMIMPubMedUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PIBF1_HUMAN
DESCRIPTION: RecName: Full=Progesterone-induced-blocking factor 1;
FUNCTION: Mediator of progesterone that by acting on the phospholipase A2 enzyme interferes with arachidonic acid metabolism, induces a Th2 biased immune response, and by controlling NK activity exerts an anti-abortive effect.
TISSUE SPECIFICITY: Expressed at highest levels in testis. Moderate expression is detected in spleen, thymus, prostate, ovary, small intestine, and colon.
INDUCTION: By progesterone.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PIBF1
Diseases sorted by gene-association score: breast lymphoma (18), pregnancy loss, recurrent 1 (11), microcephaly (2)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 10.36 RPKM in Testis
Total median expression: 217.21 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -81.20264-0.308 Picture PostScript Text
3' UTR -100.50542-0.185 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR026205 - PIBF1

SCOP Domains:
58104 - Methyl-accepting chemotaxis protein (MCP) signaling domain

ModBase Predicted Comparative 3D Structure on Q8WXW3
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005136 interleukin-4 receptor binding
GO:0005515 protein binding

Biological Process:
GO:0002376 immune system process
GO:0007080 mitotic metaphase plate congression
GO:0031393 negative regulation of prostaglandin biosynthetic process
GO:0032695 negative regulation of interleukin-12 production
GO:0032733 positive regulation of interleukin-10 production
GO:0032815 negative regulation of natural killer cell activation
GO:0042531 positive regulation of tyrosine phosphorylation of STAT protein
GO:0042532 negative regulation of tyrosine phosphorylation of STAT protein
GO:0042976 activation of Janus kinase activity
GO:0071539 protein localization to centrosome
GO:0090307 mitotic spindle assembly
GO:1905515 non-motile cilium assembly

Cellular Component:
GO:0005576 extracellular region
GO:0005615 extracellular space
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005856 cytoskeleton
GO:0034451 centriolar satellite


-  Descriptions from all associated GenBank mRNAs
  AF330046 - Homo sapiens progesterone-induced blocking factor 1 (PIBF1) mRNA, complete cds.
AK309828 - Homo sapiens cDNA, FLJ99869.
BC006009 - Homo sapiens progesterone immunomodulatory binding factor 1, mRNA (cDNA clone IMAGE:4294615), partial cds.
BC008432 - Homo sapiens chromosome 13 open reading frame 24, mRNA (cDNA clone IMAGE:4074867).
BC041806 - Homo sapiens progesterone immunomodulatory binding factor 1, mRNA (cDNA clone MGC:41850 IMAGE:5269898), complete cds.
BC051911 - Homo sapiens progesterone immunomodulatory binding factor 1, mRNA (cDNA clone MGC:60388 IMAGE:6140514), complete cds.
AY370776 - Homo sapiens progesterone-induced blocking factor splice variant (PIBF1) mRNA, complete cds; alternatively spliced.
AY375528 - Homo sapiens progesterone-induced blocking factor splice variant (PIBF1) mRNA, complete cds; alternatively spliced.
KJ902111 - Synthetic construct Homo sapiens clone ccsbBroadEn_11505 PIBF1 gene, encodes complete protein.

-  Other Names for This Gene
  Alternate Gene Symbols: C13orf24, ENST00000326291.1, ENST00000326291.10, ENST00000326291.2, ENST00000326291.3, ENST00000326291.4, ENST00000326291.5, ENST00000326291.6, ENST00000326291.7, ENST00000326291.8, ENST00000326291.9, NR_146206, O95664, PIBF, PIBF1_HUMAN, Q6U9V2, Q6UG50, Q86V07, Q8WXW3, Q96SF4, uc317sam.1, uc317sam.2
UCSC ID: ENST00000326291.11_4
RefSeq Accession: NM_006346.4
Protein: Q8WXW3 (aka PIBF1_HUMAN or PIBF_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.