Human Gene PRKX (ENST00000262848.6_7) from GENCODE V47lift37
  Description: protein kinase X-linked (from RefSeq NM_005044.5)
Gencode Transcript: ENST00000262848.6_7
Gencode Gene: ENSG00000183943.6_9
Transcript (Including UTRs)
   Position: hg19 chrX:3,522,381-3,631,690 Size: 109,310 Total Exon Count: 9 Strand: -
Coding Region
   Position: hg19 chrX:3,530,241-3,631,294 Size: 101,054 Coding Exon Count: 8 

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Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:3,522,381-3,631,690)mRNA (may differ from genome)Protein (358 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PRKX_HUMAN
DESCRIPTION: RecName: Full=cAMP-dependent protein kinase catalytic subunit PRKX; Short=PrKX; Short=Protein kinase X; Short=Protein kinase X-linked; Short=Serine/threonine-protein kinase PRKX; EC=2.7.11.1; AltName: Full=Protein kinase PKX1;
FUNCTION: Serine/threonine protein kinase regulated by and mediating cAMP signaling in cells. Acts through phosphorylation of downstream targets that may include CREB, SMAD6 and PKD1 and has multiple functions in cellular differentiation and epithelial morphogenesis. Regulates myeloid cell differentiation through SMAD6 phosphorylation. Involved in nephrogenesis by stimulating renal epithelial cell migration and tubulogenesis. Also involved in angiogenesis through stimulation of endothelial cell proliferation, migration and vascular-like structure formation.
CATALYTIC ACTIVITY: ATP + a protein = ADP + a phosphoprotein.
ENZYME REGULATION: Binding of cAMP to the PRKAR1A or PRKAR1B regulatory subunits induces dissociation of the holoenzyme heterotetramer. The released monomeric PRKX is then active and able to phosphorylate its substrates.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=127 uM for ATP (in the presence of 10 mM magnesium chloride); KM=58 uM for kemptide (in the presence of 10 mM magnesium chloride); KM=6.7 uM for kemptide (in the presence of 1 uM Br-cAMP at 30 degrees Celsius);
SUBUNIT: Like other cAMP-dependent protein kinases, the inactive holoenzyme is probably composed of 2 PRKX catalytic subunits and a dimer of regulatory subunits. Interacts (cAMP-dependent) specifically with the regulatory subunits PRKAR1A and PRKAR1B. Compared to other cAMP-dependent serine/threonine protein kinases, does not interact with the 2 other PKA regulatory subunits PRKAR2A and PRKAR2B. Interacts with cAMP-dependent protein kinase inhibitor/PKI proteins; inhibits PRKX. Interacts with GPKOW. Interacts with SMAD6. Interacts with PKD1; involved in differentiation and controlled morphogenesis of the kidney. Interacts with PIN1 (via WW domain).
INTERACTION: Q92917:GPKOW; NbExp=2; IntAct=EBI-4302903, EBI-746309; P10644:PRKAR1A; NbExp=2; IntAct=EBI-4302903, EBI-476431; O43541:SMAD6; NbExp=5; IntAct=EBI-4302903, EBI-976374;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus. Note=cAMP induces nuclear translocation.
TISSUE SPECIFICITY: Widely expressed (at protein level). Specifically expressed in blood by macrophages and granulocytes according to PubMed:9860982.
DEVELOPMENTAL STAGE: Expression is developmentally regulated being high and specific in a wide range of developing tissues including liver, kidney, brain and pancreas (at protein level).
INDUCTION: Up-regulated by phorbol 12-myristate 13-acetate (PMA).
PTM: Phosphorylated; autophosphorylates in vitro.
DISEASE: Note=A chromosomal aberration involving PRKX is a cause of sex reversal disorder. Translocation t(X;Y)(p22;p11) with PRKY. Chromosomal translocations proximal to PRKY account for about 30% of the cases of sex reversal disorder in XX males and XY females.
SIMILARITY: Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. cAMP subfamily.
SIMILARITY: Contains 1 AGC-kinase C-terminal domain.
SIMILARITY: Contains 1 protein kinase domain.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PRKX
Diseases sorted by gene-association score: asbestos-related lung carcinoma (3)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 19.44 RPKM in Thyroid
Total median expression: 187.81 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -204.00396-0.515 Picture PostScript Text
3' UTR -1367.304629-0.295 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000961 - AGC-kinase_C
IPR011009 - Kinase-like_dom
IPR000719 - Prot_kinase_cat_dom
IPR017441 - Protein_kinase_ATP_BS
IPR002290 - Ser/Thr_dual-sp_kinase_dom
IPR008271 - Ser/Thr_kinase_AS

Pfam Domains:
PF00069 - Protein kinase domain
PF07714 - Protein tyrosine and serine/threonine kinase
PF14531 - Kinase-like

SCOP Domains:
52374 - Nucleotidylyl transferase
56112 - Protein kinase-like (PK-like)

ModBase Predicted Comparative 3D Structure on P51817
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004672 protein kinase activity
GO:0004674 protein serine/threonine kinase activity
GO:0004691 cAMP-dependent protein kinase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016301 kinase activity
GO:0016740 transferase activity

Biological Process:
GO:0001525 angiogenesis
GO:0001935 endothelial cell proliferation
GO:0006468 protein phosphorylation
GO:0007155 cell adhesion
GO:0007275 multicellular organism development
GO:0016310 phosphorylation
GO:0018105 peptidyl-serine phosphorylation
GO:0030099 myeloid cell differentiation
GO:0030154 cell differentiation
GO:0030155 regulation of cell adhesion
GO:0030334 regulation of cell migration
GO:0031589 cell-substrate adhesion
GO:0043542 endothelial cell migration
GO:0046777 protein autophosphorylation
GO:0060562 epithelial tube morphogenesis
GO:0060993 kidney morphogenesis
GO:2000696 regulation of epithelial cell differentiation involved in kidney development

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm


-  Descriptions from all associated GenBank mRNAs
  X85545 - H.sapiens mRNA for protein kinase, PKX1.
BC041073 - Homo sapiens protein kinase, X-linked, mRNA (cDNA clone MGC:52228 IMAGE:5485308), complete cds.
EU832357 - Synthetic construct Homo sapiens clone HAIB:100067386; DKFZo008H1127 protein kinase, X-linked protein (PRKX) gene, encodes complete protein.
EU832442 - Synthetic construct Homo sapiens clone HAIB:100067471; DKFZo004H1128 protein kinase, X-linked protein (PRKX) gene, encodes complete protein.
JD432364 - Sequence 413388 from Patent EP1572962.
JD112950 - Sequence 93974 from Patent EP1572962.
JD166180 - Sequence 147204 from Patent EP1572962.
JD172319 - Sequence 153343 from Patent EP1572962.
JD528765 - Sequence 509789 from Patent EP1572962.
JD362889 - Sequence 343913 from Patent EP1572962.
JD491483 - Sequence 472507 from Patent EP1572962.
JD263764 - Sequence 244788 from Patent EP1572962.
JD098737 - Sequence 79761 from Patent EP1572962.
JD121523 - Sequence 102547 from Patent EP1572962.
JD123234 - Sequence 104258 from Patent EP1572962.
JD478734 - Sequence 459758 from Patent EP1572962.
JD239253 - Sequence 220277 from Patent EP1572962.
JD456353 - Sequence 437377 from Patent EP1572962.
JD357633 - Sequence 338657 from Patent EP1572962.
JD252841 - Sequence 233865 from Patent EP1572962.
JD248744 - Sequence 229768 from Patent EP1572962.
JD315698 - Sequence 296722 from Patent EP1572962.
JD378887 - Sequence 359911 from Patent EP1572962.
JD423091 - Sequence 404115 from Patent EP1572962.
JD483008 - Sequence 464032 from Patent EP1572962.
JD408312 - Sequence 389336 from Patent EP1572962.
JD283331 - Sequence 264355 from Patent EP1572962.
JD258498 - Sequence 239522 from Patent EP1572962.
JD259113 - Sequence 240137 from Patent EP1572962.
JD169124 - Sequence 150148 from Patent EP1572962.
JD377623 - Sequence 358647 from Patent EP1572962.
JD168147 - Sequence 149171 from Patent EP1572962.
JD310368 - Sequence 291392 from Patent EP1572962.
JD310367 - Sequence 291391 from Patent EP1572962.
JD113132 - Sequence 94156 from Patent EP1572962.
JD314691 - Sequence 295715 from Patent EP1572962.
JD332680 - Sequence 313704 from Patent EP1572962.
JD240748 - Sequence 221772 from Patent EP1572962.
JD058544 - Sequence 39568 from Patent EP1572962.
JD137109 - Sequence 118133 from Patent EP1572962.
JD524269 - Sequence 505293 from Patent EP1572962.
JD195096 - Sequence 176120 from Patent EP1572962.
JD324568 - Sequence 305592 from Patent EP1572962.
JD102443 - Sequence 83467 from Patent EP1572962.
JD434274 - Sequence 415298 from Patent EP1572962.
JD483214 - Sequence 464238 from Patent EP1572962.
JD277803 - Sequence 258827 from Patent EP1572962.
JD073766 - Sequence 54790 from Patent EP1572962.
JD327690 - Sequence 308714 from Patent EP1572962.
JD185509 - Sequence 166533 from Patent EP1572962.
JD438408 - Sequence 419432 from Patent EP1572962.
JD516491 - Sequence 497515 from Patent EP1572962.
JD135310 - Sequence 116334 from Patent EP1572962.
JD531589 - Sequence 512613 from Patent EP1572962.
JD324427 - Sequence 305451 from Patent EP1572962.
JD214218 - Sequence 195242 from Patent EP1572962.
JD266567 - Sequence 247591 from Patent EP1572962.
JD231563 - Sequence 212587 from Patent EP1572962.
JD266568 - Sequence 247592 from Patent EP1572962.
JD344282 - Sequence 325306 from Patent EP1572962.
JD170457 - Sequence 151481 from Patent EP1572962.
JD472645 - Sequence 453669 from Patent EP1572962.
JD166146 - Sequence 147170 from Patent EP1572962.
JD201938 - Sequence 182962 from Patent EP1572962.
JD213976 - Sequence 195000 from Patent EP1572962.
JD249289 - Sequence 230313 from Patent EP1572962.
JD094898 - Sequence 75922 from Patent EP1572962.
JD094899 - Sequence 75923 from Patent EP1572962.
JD355450 - Sequence 336474 from Patent EP1572962.
JD197894 - Sequence 178918 from Patent EP1572962.
JD276904 - Sequence 257928 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000262848.1, ENST00000262848.2, ENST00000262848.3, ENST00000262848.4, ENST00000262848.5, NM_005044, P51817, PKX1, PRKX_HUMAN, uc317hdz.1, uc317hdz.2
UCSC ID: ENST00000262848.6_7
RefSeq Accession: NM_005044.5
Protein: P51817 (aka PRKX_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.