Human Gene PRMT8 (ENST00000382622.4_4) from GENCODE V47lift37
  Description: protein arginine methyltransferase 8, transcript variant 1 (from RefSeq NM_019854.5)
Gencode Transcript: ENST00000382622.4_4
Gencode Gene: ENSG00000111218.12_8
Transcript (Including UTRs)
   Position: hg19 chr12:3,600,369-3,703,139 Size: 102,771 Total Exon Count: 10 Strand: +
Coding Region
   Position: hg19 chr12:3,600,792-3,702,348 Size: 101,557 Coding Exon Count: 10 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr12:3,600,369-3,703,139)mRNA (may differ from genome)Protein (394 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
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-  Comments and Description Text from UniProtKB
  ID: ANM8_HUMAN
DESCRIPTION: RecName: Full=Protein arginine N-methyltransferase 8; EC=2.1.1.-; AltName: Full=Heterogeneous nuclear ribonucleoprotein methyltransferase-like protein 4;
FUNCTION: Membrane-associated arginine methyltransferase that can both catalyze the formation of omega-N monomethylarginine (MMA) and asymmetrical dimethylarginine (aDMA). Able to mono- and dimethylate EWS protein; however its precise role toward EWS remains unclear as it still interacts with fully methylated EWS.
BIOPHYSICOCHEMICAL PROPERTIES: Kinetic parameters: KM=1.3 uM for GRGGFGGRGGFRGGRGG-NH2;
SUBUNIT: Homodimers and heterodimers with PRMT1 or PRMT2, recruiting PRMT1 to the cell membrane. Interacts with PRMT2 and FYN (via the SH3 domain). Interacts with EWS; independently of EWS methylation status.
INTERACTION: Self; NbExp=3; IntAct=EBI-745545, EBI-745545;
SUBCELLULAR LOCATION: Cell membrane; Lipid-anchor; Cytoplasmic side.
TISSUE SPECIFICITY: Brain-specific.
DOMAIN: The SH3-binding motifs mediate the interaction with SH3 domain-containing proteins such as PRMT2 and FYN, possibly leading to displace the N-terminal domain and activate the protein.
DOMAIN: The N-terminal region (1-60) inhibits the enzymatic activity.
SIMILARITY: Belongs to the protein arginine N-methyltransferase family. PRMT8 subfamily.
SEQUENCE CAUTION: Sequence=AAF91390.1; Type=Erroneous initiation; Sequence=BAG37987.1; Type=Frameshift; Positions=45;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
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-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 12.29 RPKM in Brain - Nucleus accumbens (basal ganglia)
Total median expression: 84.16 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
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-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -179.60423-0.425 Picture PostScript Text
3' UTR -252.80791-0.320 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR025799 - Arg_MeTrfase
IPR010456 - Ribosomal-L11_MeTrfase_PrmA

Pfam Domains:
PF06325 - Ribosomal protein L11 methyltransferase (PrmA)
PF08241 - Methyltransferase domain
PF13649 - Methyltransferase domain

SCOP Domains:
51735 - NAD(P)-binding Rossmann-fold domains
53335 - S-adenosyl-L-methionine-dependent methyltransferases

ModBase Predicted Comparative 3D Structure on Q9NR22
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-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008168 methyltransferase activity
GO:0008469 histone-arginine N-methyltransferase activity
GO:0008757 S-adenosylmethionine-dependent methyltransferase activity
GO:0016740 transferase activity
GO:0035241 protein-arginine omega-N monomethyltransferase activity
GO:0035242 protein-arginine omega-N asymmetric methyltransferase activity
GO:0042802 identical protein binding
GO:0042803 protein homodimerization activity
GO:0046982 protein heterodimerization activity
GO:1904047 S-adenosyl-L-methionine binding

Biological Process:
GO:0006355 regulation of transcription, DNA-templated
GO:0006479 protein methylation
GO:0016571 histone methylation
GO:0018216 peptidyl-arginine methylation
GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine
GO:0032259 methylation
GO:0034969 histone arginine methylation
GO:0043393 regulation of protein binding
GO:0051260 protein homooligomerization

Cellular Component:
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0098753 anchored component of the cytoplasmic side of the plasma membrane
GO:0005634 nucleus


-  Descriptions from all associated GenBank mRNAs
  KR014345 - Homo sapiens arginine methyltransferase 8 isoform 4 (PRMT8) mRNA, partial cds.
AK315619 - Homo sapiens cDNA, FLJ96700, highly similar to Homo sapiens HMT1 hnRNP methyltransferase-like 4 (S. cerevisiae)(HRMT1L4), mRNA.
AB209027 - Homo sapiens mRNA for Protein arginine N-methyltransferase 4 variant protein.
BC022458 - Homo sapiens protein arginine methyltransferase 8, mRNA (cDNA clone MGC:26069 IMAGE:4796524), complete cds.
AB590500 - Synthetic construct DNA, clone: pFN21AE1873, Homo sapiens PRMT8 gene for protein arginine methyltransferase 8, without stop codon, in Flexi system.
AK026786 - Homo sapiens cDNA: FLJ23133 fis, clone LNG08560.
AF263539 - Homo sapiens arginine N-methyltransferase (HRMT1L3) mRNA, complete cds.
DQ892381 - Synthetic construct clone IMAGE:100005011; FLH185782.01X; RZPDo839E12148D protein arginine methyltransferase 8 (PRMT8) gene, encodes complete protein.
DQ895593 - Synthetic construct Homo sapiens clone IMAGE:100010053; FLH185778.01L; RZPDo839E12147D protein arginine methyltransferase 8 (PRMT8) gene, encodes complete protein.
KJ902909 - Synthetic construct Homo sapiens clone ccsbBroadEn_12303 PRMT8 gene, encodes complete protein.
JD226072 - Sequence 207096 from Patent EP1572962.
JD263374 - Sequence 244398 from Patent EP1572962.
JD464753 - Sequence 445777 from Patent EP1572962.
JD090637 - Sequence 71661 from Patent EP1572962.
JD387833 - Sequence 368857 from Patent EP1572962.
AK093651 - Homo sapiens cDNA FLJ36332 fis, clone THYMU2006098, highly similar to Homo sapiens arginine N-methyltransferase (HRMT1L3) mRNA.
JD196623 - Sequence 177647 from Patent EP1572962.
JD092826 - Sequence 73850 from Patent EP1572962.
JD389160 - Sequence 370184 from Patent EP1572962.
JD316636 - Sequence 297660 from Patent EP1572962.
JD132332 - Sequence 113356 from Patent EP1572962.
JD398238 - Sequence 379262 from Patent EP1572962.
JD287407 - Sequence 268431 from Patent EP1572962.
JD176995 - Sequence 158019 from Patent EP1572962.
JD286170 - Sequence 267194 from Patent EP1572962.
JD150062 - Sequence 131086 from Patent EP1572962.
JD144425 - Sequence 125449 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: ANM8_HUMAN, B2RDP0, ENST00000382622.1, ENST00000382622.2, ENST00000382622.3, HRMT1L3, HRMT1L4, NM_019854, PRMT8 , Q8TBJ8, Q9NR22, uc318qxt.1, uc318qxt.2
UCSC ID: ENST00000382622.4_4
RefSeq Accession: NM_019854.5
Protein: Q9NR22 (aka ANM8_HUMAN)

-  Gene Model Information
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-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.