Human Gene PROKR2 (ENST00000678254.1_5) from GENCODE V47lift37
  Description: prokineticin receptor 2 (from RefSeq NM_144773.4)
Gencode Transcript: ENST00000678254.1_5
Gencode Gene: ENSG00000101292.8_10
Transcript (Including UTRs)
   Position: hg19 chr20:5,279,864-5,297,600 Size: 17,737 Total Exon Count: 3 Strand: -
Coding Region
   Position: hg19 chr20:5,282,686-5,295,015 Size: 12,330 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesGeneReviewsModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr20:5,279,864-5,297,600)mRNA (may differ from genome)Protein (384 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PKR2_HUMAN
DESCRIPTION: RecName: Full=Prokineticin receptor 2; Short=PK-R2; AltName: Full=G-protein coupled receptor 73-like 1; AltName: Full=GPR73b; AltName: Full=GPRg2;
FUNCTION: Receptor for prokineticin 2. Exclusively coupled to the G(q) subclass of heteromeric G proteins. Activation leads to mobilization of calcium, stimulation of phosphoinositide turnover and activation of p44/p42 mitogen-activated protein kinase.
SUBUNIT: Homodimer.
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein.
TISSUE SPECIFICITY: Expressed in the ileocecum, thyroid gland, pituitary gland, salivary gland, adrenal gland, testis, ovary and brain.
DISEASE: Defects in PROKR2 are the cause of Kallmann syndrome type 3 (KAL3) [MIM:244200]; also known as hypogonadotropic hypogonadism and anosmia. Anosmia or hyposmia is related to the absence or hypoplasia of the olfactory bulbs and tracts. Hypogonadism is due to deficiency in gonadotropin-releasing hormone and probably results from a failure of embryonic migration of gonadotropin- releasing hormone-synthesizing neurons. KAL3 patients have variable degrees of olfactory and reproductive dysfunction, but do not show any of the occasional clinical anomalies reported in Kallmann syndrome such as renal agenesis, cleft lip and/or palate, selective tooth agenesis, and bimanual synkinesis.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.
WEB RESOURCE: Name=GeneReviews; URL="http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/PROKR2";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PROKR2
Diseases sorted by gene-association score: hypogonadotropic hypogonadism 3 with or without anosmia* (1231), prokr2-related isolated gonadotropin-releasing hormone deficiency* (500), kallmann syndrome 3* (418), kallmann syndrome* (290), normosmic congenital hypogonadotropic hypogonadism* (106), hypogonadotropic hypogonadism (14), hypogonadism (12), ectopic pregnancy (7), charge syndrome (6), pituitary stalk interruption syndrome (5), gonadal disease (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -221.60469-0.472 Picture PostScript Text
3' UTR -823.102822-0.292 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam
IPR000611 - NPY_rcpt

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

SCOP Domains:
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on Q8NFJ6
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001602 pancreatic polypeptide receptor activity
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0004983 neuropeptide Y receptor activity

Biological Process:
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0007218 neuropeptide signaling pathway
GO:0007268 chemical synaptic transmission
GO:0007623 circadian rhythm
GO:0007631 feeding behavior
GO:0008015 blood circulation

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  JD106071 - Sequence 87095 from Patent EP1572962.
JD518064 - Sequence 499088 from Patent EP1572962.
JD269629 - Sequence 250653 from Patent EP1572962.
JD364584 - Sequence 345608 from Patent EP1572962.
JD136910 - Sequence 117934 from Patent EP1572962.
JD233062 - Sequence 214086 from Patent EP1572962.
JD511465 - Sequence 492489 from Patent EP1572962.
JD135934 - Sequence 116958 from Patent EP1572962.
JD135935 - Sequence 116959 from Patent EP1572962.
JD058298 - Sequence 39322 from Patent EP1572962.
JD455087 - Sequence 436111 from Patent EP1572962.
JD135932 - Sequence 116956 from Patent EP1572962.
JD194739 - Sequence 175763 from Patent EP1572962.
JD537342 - Sequence 518366 from Patent EP1572962.
JD238090 - Sequence 219114 from Patent EP1572962.
JD491222 - Sequence 472246 from Patent EP1572962.
JD249820 - Sequence 230844 from Patent EP1572962.
JD148289 - Sequence 129313 from Patent EP1572962.
JD463802 - Sequence 444826 from Patent EP1572962.
JD483550 - Sequence 464574 from Patent EP1572962.
AK289995 - Homo sapiens cDNA FLJ76003 complete cds, highly similar to Homo sapiens G protein-coupled receptor 73-like 1 (GPR73L1), mRNA.
BC104959 - Homo sapiens prokineticin receptor 2, mRNA (cDNA clone MGC:132619 IMAGE:8143962), complete cds.
BC104961 - Homo sapiens prokineticin receptor 2, mRNA (cDNA clone MGC:132621 IMAGE:8143964), complete cds.
AB084081 - Homo sapiens mRNA for GPRg2, complete cds.
AF506288 - Homo sapiens prokineticin receptor 2 (PKR2) mRNA, complete cds.
EF577398 - Homo sapiens prokineticin receptor 2 mRNA, complete cds.
KJ900121 - Synthetic construct Homo sapiens clone ccsbBroadEn_09515 PROKR2 gene, encodes complete protein.
AB385531 - Synthetic construct DNA, clone: pF1KB3956, Homo sapiens PROKR2 gene for prokineticin receptor 2, complete cds, without stop codon, in Flexi system.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q8NFJ6 (Reactome details) participates in the following event(s):

R-HSA-444691 Prokineticin receptors bind prokineticin
R-HSA-749452 The Ligand:GPCR:Gq complex dissociates
R-HSA-749448 Liganded Gq-activating GPCRs bind inactive heterotrimeric Gq
R-HSA-379048 Liganded Gq/11-activating GPCRs act as GEFs for Gq/11
R-HSA-375276 Peptide ligand-binding receptors
R-HSA-416476 G alpha (q) signalling events
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-388396 GPCR downstream signalling
R-HSA-500792 GPCR ligand binding
R-HSA-372790 Signaling by GPCR
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A5JUU1, GPR73L1, NM_144773, PKR2, PKR2_HUMAN, Q2M3C0, Q5TDY1, Q8NFJ6, Q9NTT0, uc330dty.1, uc330dty.2
UCSC ID: ENST00000678254.1_5
RefSeq Accession: NM_144773.4
Protein: Q8NFJ6 (aka PKR2_HUMAN)

-  GeneReviews for This Gene
  GeneReviews article(s) related to gene PROKR2:
kms (Isolated Gonadotropin-Releasing Hormone (GnRH) Deficiency)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.