Human Gene PTGDR (ENST00000306051.3_7) from GENCODE V47lift37
  Description: prostaglandin D2 receptor, transcript variant 1 (from RefSeq NM_000953.3)
Gencode Transcript: ENST00000306051.3_7
Gencode Gene: ENSG00000168229.4_10
Transcript (Including UTRs)
   Position: hg19 chr14:52,734,416-52,743,442 Size: 9,027 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr14:52,734,533-52,741,682 Size: 7,150 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr14:52,734,416-52,743,442)mRNA (may differ from genome)Protein (359 aa)
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HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: PD2R_HUMAN
DESCRIPTION: RecName: Full=Prostaglandin D2 receptor; Short=PGD receptor; Short=PGD2 receptor; AltName: Full=Prostanoid DP receptor;
FUNCTION: Receptor for prostaglandin D2 (PGD2). The activity of this receptor is mainly mediated by G(s) proteins that stimulate adenylate cyclase, resulting in an elevation of intracellular cAMP. A mobilization of calcium is also observed, but without formation of inositol 1,4,5-trisphosphate (By similarity).
SUBCELLULAR LOCATION: Cell membrane; Multi-pass membrane protein (Potential).
TISSUE SPECIFICITY: Expressed in retinal choroid, ciliary epithelium, longitudinal and circular ciliary muscles, iris, small intestine and platelet membranes.
DISEASE: Genetic variations in PTGDR are associated with susceptibility to asthma-related traits type 1 (ASRT1) [MIM:607277]. Asthma-related traits include clinical symptoms of asthma, such as coughing, wheezing and dyspnea.
SIMILARITY: Belongs to the G-protein coupled receptor 1 family.
WEB RESOURCE: Name=SeattleSNPs; URL="http://pga.gs.washington.edu/data/apobec3f/";

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: PTGDR
Diseases sorted by gene-association score: asthma 1* (575), asthma (11), rosacea (10), atopy (7), anemia of prematurity (6), deafness, autosomal dominant 17 (5), dermatitis (4)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 4.55 RPKM in Colon - Transverse
Total median expression: 30.52 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -48.60117-0.415 Picture PostScript Text
3' UTR -430.401760-0.245 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000276 - 7TM_GPCR_Rhodpsn
IPR017452 - GPCR_Rhodpsn_supfam
IPR000376 - Pglndn_D_rcpt
IPR008365 - Prostanoid_rcpt

Pfam Domains:
PF00001 - 7 transmembrane receptor (rhodopsin family)

SCOP Domains:
53790 - Tetrapyrrole methylase
81321 - Family A G protein-coupled receptor-like

ModBase Predicted Comparative 3D Structure on Q13258
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001785 prostaglandin J receptor activity
GO:0004871 signal transducer activity
GO:0004930 G-protein coupled receptor activity
GO:0004956 prostaglandin D receptor activity
GO:0004957 prostaglandin E receptor activity
GO:0005515 protein binding

Biological Process:
GO:0006954 inflammatory response
GO:0007165 signal transduction
GO:0007186 G-protein coupled receptor signaling pathway
GO:0030238 male sex determination
GO:0030431 sleep
GO:0046085 adenosine metabolic process
GO:0071380 cellular response to prostaglandin E stimulus
GO:0071799 cellular response to prostaglandin D stimulus

Cellular Component:
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC040968 - Homo sapiens prostaglandin D2 receptor (DP), mRNA (cDNA clone MGC:49004 IMAGE:5769056), complete cds.
AB464671 - Synthetic construct DNA, clone: pF1KB8970, Homo sapiens PTGDR gene for prostaglandin D2 receptor, without stop codon, in Flexi system.
KJ891937 - Synthetic construct Homo sapiens clone ccsbBroadEn_01331 PTGDR gene, encodes complete protein.
EF577397 - Homo sapiens prostaglandin D2 receptor mRNA, complete cds.
U31099 - Human DP prostanoid receptor (PTGDR) mRNA, partial cds.
JD410482 - Sequence 391506 from Patent EP1572962.
JD120038 - Sequence 101062 from Patent EP1572962.
AK026202 - Homo sapiens cDNA: FLJ22549 fis, clone HSI00650.
JD357263 - Sequence 338287 from Patent EP1572962.
JD183187 - Sequence 164211 from Patent EP1572962.
JD323932 - Sequence 304956 from Patent EP1572962.
JD292233 - Sequence 273257 from Patent EP1572962.
JD296452 - Sequence 277476 from Patent EP1572962.
JD358974 - Sequence 339998 from Patent EP1572962.
JD038567 - Sequence 19591 from Patent EP1572962.
JD524332 - Sequence 505356 from Patent EP1572962.
JD109695 - Sequence 90719 from Patent EP1572962.
JD295894 - Sequence 276918 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q13258 (Reactome details) participates in the following event(s):

R-HSA-391935 DP1 receptor can bind PGD2
R-HSA-744886 The Ligand:GPCR:Gs complex dissociates
R-HSA-744887 Liganded Gs-activating GPCRs bind inactive heterotrimeric Gs
R-HSA-379044 Liganded Gs-activating GPCR acts as a GEF for Gs
R-HSA-391908 Prostanoid ligand receptors
R-HSA-418555 G alpha (s) signalling events
R-HSA-391903 Eicosanoid ligand-binding receptors
R-HSA-388396 GPCR downstream signalling
R-HSA-373076 Class A/1 (Rhodopsin-like receptors)
R-HSA-372790 Signaling by GPCR
R-HSA-500792 GPCR ligand binding
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000306051.1, ENST00000306051.2, G3V5L3, NM_000953, PD2R_HUMAN, Q13250, Q13251, Q13258, Q1ZZ52, uc317ntd.1, uc317ntd.2
UCSC ID: ENST00000306051.3_7
RefSeq Accession: NM_000953.3
Protein: Q13258 (aka PD2R_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.