Human Gene RANBP10 (ENST00000317506.8_10) from GENCODE V47lift37
  Description: RAN binding protein 10, transcript variant 1 (from RefSeq NM_020850.3)
Gencode Transcript: ENST00000317506.8_10
Gencode Gene: ENSG00000141084.12_15
Transcript (Including UTRs)
   Position: hg19 chr16:67,756,973-67,840,463 Size: 83,491 Total Exon Count: 14 Strand: -
Coding Region
   Position: hg19 chr16:67,760,331-67,840,439 Size: 80,109 Coding Exon Count: 14 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr16:67,756,973-67,840,463)mRNA (may differ from genome)Protein (620 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
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HGNCMGIOMIMPubMedReactomeUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: RBP10_HUMAN
DESCRIPTION: RecName: Full=Ran-binding protein 10; Short=RanBP10;
FUNCTION: Acts as a guanine nucleotide exchange factor (GEF) for RAN GTPase (By similarity). May play an essential role in hemostasis and in maintaining microtubule dynamics with respect to both platelet shape and function (By similarity). May act as an adapter protein to couple membrane receptors to intracellular signaling pathways. Enhances dihydrotestosterone-induced transactivation activity of AR, as well as dexamethasone-induced transactivation activity of NR3C1, but does not affect estrogen- induced transactivation. In contrast to RANBP9, does not interact with Sos and does not activate the Ras pathway.
SUBUNIT: May form homodimers. Interacts with RAN and RANBP9. Interacts with the HGF receptor MET. Interacts with AR. Interacts with TUBB1. May interact with TUBB5 (By similarity).
SUBCELLULAR LOCATION: Cytoplasm, cytosol. Nucleus. Note=Predominantly cytoplasmic.
TISSUE SPECIFICITY: Broadly expressed, with highest levels in skeletal muscle.
DOMAIN: The SPRY domain mediates the interaction with MET (By similarity).
SIMILARITY: Belongs to the RANBP9/10 family.
SIMILARITY: Contains 1 B30.2/SPRY domain.
SIMILARITY: Contains 1 CTLH domain.
SIMILARITY: Contains 1 LisH domain.
SEQUENCE CAUTION: Sequence=BAA95988.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 20.77 RPKM in Brain - Cerebellum
Total median expression: 400.44 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR 0.00240.000 Picture PostScript Text
3' UTR -1221.103358-0.364 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR001870 - B30.2/SPRY
IPR008985 - ConA-like_lec_gl_sf
IPR013144 - CRA_dom
IPR024964 - CTLH/CRA
IPR006595 - CTLH_C
IPR006594 - LisH_dimerisation
IPR013720 - LisH_dimerisation_subgr
IPR018355 - SPla/RYanodine_receptor_subgr
IPR003877 - SPRY_rcpt

Pfam Domains:
PF00622 - SPRY domain
PF08513 - LisH
PF10607 - CTLH/CRA C-terminal to LisH motif domain

SCOP Domains:
49899 - Concanavalin A-like lectins/glucanases

ModBase Predicted Comparative 3D Structure on Q6VN20
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  LF208282 - JP 2014500723-A/15785: Polycomb-Associated Non-Coding RNAs.
AK000686 - Homo sapiens cDNA FLJ20679 fis, clone KAIA414.
AB040897 - Homo sapiens KIAA1464 mRNA for KIAA1464 protein.
BC099917 - Homo sapiens RAN binding protein 10, mRNA (cDNA clone MGC:104727 IMAGE:30528481), complete cds.
AY337313 - Homo sapiens Ran-binding protein 10 (RANBP10) mRNA, complete cds.
AK298806 - Homo sapiens cDNA FLJ58041 complete cds, highly similar to Homo sapiens RAN binding protein 10 (RANBP10), mRNA.
AK055727 - Homo sapiens cDNA FLJ31165 fis, clone KIDNE1000121, highly similar to Homo sapiens RAN binding protein 10 (RANBP10), mRNA.
AK295530 - Homo sapiens cDNA FLJ58184 complete cds, highly similar to Homo sapiens RAN binding protein 10 (RANBP10), mRNA.
BC121176 - Homo sapiens RAN binding protein 10, mRNA (cDNA clone MGC:150563 IMAGE:40122561), complete cds.
BC121177 - Homo sapiens RAN binding protein 10, mRNA (cDNA clone MGC:150564 IMAGE:40122562), complete cds.
KJ906280 - Synthetic construct Homo sapiens clone ccsbBroadEn_15950 RANBP10 gene, encodes complete protein.
AB384605 - Synthetic construct DNA, clone: pF1KA1464, Homo sapiens RANBP10 gene for RAN binding protein 10, complete cds, without stop codon, in Flexi system.
MA443859 - JP 2018138019-A/15785: Polycomb-Associated Non-Coding RNAs.
AL137299 - Homo sapiens mRNA; cDNA DKFZp434O1616 (from clone DKFZp434O1616).
AK055634 - Homo sapiens cDNA FLJ31072 fis, clone HSYRA2001396.
JD094751 - Sequence 75775 from Patent EP1572962.
JD185026 - Sequence 166050 from Patent EP1572962.
JD345048 - Sequence 326072 from Patent EP1572962.
JD497408 - Sequence 478432 from Patent EP1572962.
JD184241 - Sequence 165265 from Patent EP1572962.
JD104121 - Sequence 85145 from Patent EP1572962.
JD475872 - Sequence 456896 from Patent EP1572962.
JD477351 - Sequence 458375 from Patent EP1572962.
LF374114 - JP 2014500723-A/181617: Polycomb-Associated Non-Coding RNAs.
JD537650 - Sequence 518674 from Patent EP1572962.
JD343843 - Sequence 324867 from Patent EP1572962.
LF374115 - JP 2014500723-A/181618: Polycomb-Associated Non-Coding RNAs.
LF374116 - JP 2014500723-A/181619: Polycomb-Associated Non-Coding RNAs.
JD187448 - Sequence 168472 from Patent EP1572962.
JD403757 - Sequence 384781 from Patent EP1572962.
JD477790 - Sequence 458814 from Patent EP1572962.
LF374119 - JP 2014500723-A/181622: Polycomb-Associated Non-Coding RNAs.
LF374120 - JP 2014500723-A/181623: Polycomb-Associated Non-Coding RNAs.
MA609691 - JP 2018138019-A/181617: Polycomb-Associated Non-Coding RNAs.
MA609692 - JP 2018138019-A/181618: Polycomb-Associated Non-Coding RNAs.
MA609693 - JP 2018138019-A/181619: Polycomb-Associated Non-Coding RNAs.
MA609696 - JP 2018138019-A/181622: Polycomb-Associated Non-Coding RNAs.
MA609697 - JP 2018138019-A/181623: Polycomb-Associated Non-Coding RNAs.
AK304030 - Homo sapiens cDNA FLJ61049 complete cds, highly similar to Homo sapiens RAN binding protein 10 (RANBP10), mRNA.
AK295171 - Homo sapiens cDNA FLJ57982 complete cds, highly similar to Homo sapiens RAN binding protein 10 (RANBP10), mRNA.
LF374121 - JP 2014500723-A/181624: Polycomb-Associated Non-Coding RNAs.
JD530603 - Sequence 511627 from Patent EP1572962.
LF374135 - JP 2014500723-A/181638: Polycomb-Associated Non-Coding RNAs.
JD276742 - Sequence 257766 from Patent EP1572962.
JD395387 - Sequence 376411 from Patent EP1572962.
JD046681 - Sequence 27705 from Patent EP1572962.
MA609698 - JP 2018138019-A/181624: Polycomb-Associated Non-Coding RNAs.
MA609712 - JP 2018138019-A/181638: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q6VN20 (Reactome details) participates in the following event(s):

R-HSA-8851866 MET binds RANBP10
R-HSA-8851805 MET activates RAS signaling
R-HSA-6806834 Signaling by MET
R-HSA-9006934 Signaling by Receptor Tyrosine Kinases
R-HSA-162582 Signal Transduction

-  Other Names for This Gene
  Alternate Gene Symbols: A4FTY2, B4DID0, B4DQH9, E7EW27, ENST00000317506.1, ENST00000317506.2, ENST00000317506.3, ENST00000317506.4, ENST00000317506.5, ENST00000317506.6, ENST00000317506.7, KIAA1464, NM_020850, Q6VN20, Q9P264, RBP10_HUMAN, uc317qgf.1, uc317qgf.2
UCSC ID: ENST00000317506.8_10
RefSeq Accession: NM_020850.3
Protein: Q6VN20 (aka RBP10_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.