Human Gene SMURF2 (ENST00000262435.14_7) from GENCODE V47lift37
  Description: SMAD specific E3 ubiquitin protein ligase 2 (from RefSeq NM_022739.4)
Gencode Transcript: ENST00000262435.14_7
Gencode Gene: ENSG00000108854.16_16
Transcript (Including UTRs)
   Position: hg19 chr17:62,538,400-62,658,425 Size: 120,026 Total Exon Count: 19 Strand: -
Coding Region
   Position: hg19 chr17:62,541,966-62,657,998 Size: 116,033 Coding Exon Count: 19 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr17:62,538,400-62,658,425)mRNA (may differ from genome)Protein (748 aa)
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-  Comments and Description Text from UniProtKB
  ID: SMUF2_HUMAN
DESCRIPTION: RecName: Full=E3 ubiquitin-protein ligase SMURF2; Short=hSMURF2; EC=6.3.2.-; AltName: Full=SMAD ubiquitination regulatory factor 2; AltName: Full=SMAD-specific E3 ubiquitin-protein ligase 2;
FUNCTION: E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Interacts with SMAD1 and SMAD7 in order to trigger their ubiquitination and proteasome-dependent degradation. In addition, interaction with SMAD7 activates autocatalytic degradation, which is prevented by interaction with SCYE1. Forms a stable complex with the TGF-beta receptor-mediated phosphorylated SMAD2 and SMAD3. In this way, SMAD2 may recruit substrates, such as SNON, for ubiquitin-mediated degradation. Enhances the inhibitory activity of SMAD7 and reduces the transcriptional activity of SMAD2. Coexpression of SMURF2 with SMAD1 results in considerable decrease in steady-state level of SMAD1 protein and a smaller decrease of SMAD2 level.
ENZYME REGULATION: Activated by NDFIP1- and NDFIP2-binding.
PATHWAY: Protein modification; protein ubiquitination.
SUBUNIT: Interacts (via WW domains) with SMAD1. Interacts (via WW domains) with SMAD2 (via PY-motif). Interacts (via WW domains) with SMAD3 (via PY-motif). Interacts with SMAD6. Interacts with SMAD7 (via PY-motif) and TGFBR1; SMAD7 recruits SMURF2 to the TGF- beta receptor and regulates its degradation. Does not interact with SMAD4; SMAD4 lacks a PY-motif. Interacts with AIMP1. Interacts with STAMBP and RNF11. Interacts with NDFIP1 and NDFIP2 (Probable); this interaction activates the E3 ubiquitin-protein ligase.
INTERACTION: Self; NbExp=5; IntAct=EBI-396727, EBI-396727; Q9Y3C5:RNF11; NbExp=3; IntAct=EBI-396727, EBI-396669; P0CG47:UBB; NbExp=4; IntAct=EBI-396727, EBI-413034;
SUBCELLULAR LOCATION: Nucleus. Cytoplasm. Cell membrane. Membrane raft. Note=Cytoplasmic in the presence of SMAD7. Co-localizes with CAV1, SMAD7 and TGF-beta receptor in membrane rafts.
TISSUE SPECIFICITY: Widely expressed.
DOMAIN: The second and third WW domains are responsible for interaction with the PY-motif of R-SMAD (SMAD1, SMAD2 and SMAD3).
DOMAIN: The C2 domain is involved in autoinhibition of the catalytic activity by interacting with the HECT domain.
PTM: Auto-ubiquitinated and ubiquitinated in the presence of RNF11 and UBE2D1. Ubiquitinated by the SCF(FBXL15) complex, leading to its degradation by the proteasome.
SIMILARITY: Contains 1 C2 domain.
SIMILARITY: Contains 1 HECT (E6AP-type E3 ubiquitin-protein ligase) domain.
SIMILARITY: Contains 3 WW domains.

-  Primer design for this transcript
 

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Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 15.22 RPKM in Cells - Cultured fibroblasts
Total median expression: 285.06 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -258.40427-0.605 Picture PostScript Text
3' UTR -902.003566-0.253 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000008 - C2_Ca-dep
IPR008973 - C2_Ca/lipid-bd_dom_CaLB
IPR018029 - C2_membr_targeting
IPR024928 - E3_ub_ligase_SMURF1
IPR000569 - HECT
IPR001202 - WW_Rsp5_WWP

Pfam Domains:
PF00168 - C2 domain
PF00397 - WW domain
PF00632 - HECT-domain (ubiquitin-transferase)

SCOP Domains:
49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
51045 - WW domain
55729 - Acyl-CoA N-acyltransferases (Nat)
56204 - Hect, E3 ligase catalytic domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
1ZVD - X-ray MuPIT 2DJY - NMR MuPIT 2JQZ - NMR MuPIT 2KXQ - NMR MuPIT


ModBase Predicted Comparative 3D Structure on Q9HAU4
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0004842 ubiquitin-protein transferase activity
GO:0005160 transforming growth factor beta receptor binding
GO:0005515 protein binding
GO:0016740 transferase activity
GO:0042802 identical protein binding
GO:0046332 SMAD binding
GO:0061630 ubiquitin protein ligase activity

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0000209 protein polyubiquitination
GO:0006511 ubiquitin-dependent protein catabolic process
GO:0016567 protein ubiquitination
GO:0016579 protein deubiquitination
GO:0017015 regulation of transforming growth factor beta receptor signaling pathway
GO:0030509 BMP signaling pathway
GO:0030512 negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030514 negative regulation of BMP signaling pathway
GO:0030579 ubiquitin-dependent SMAD protein catabolic process
GO:0045892 negative regulation of transcription, DNA-templated
GO:0060071 Wnt signaling pathway, planar cell polarity pathway
GO:0090263 positive regulation of canonical Wnt signaling pathway
GO:1901165 positive regulation of trophoblast cell migration

Cellular Component:
GO:0000151 ubiquitin ligase complex
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0016607 nuclear speck
GO:0045121 membrane raft


-  Descriptions from all associated GenBank mRNAs
  CR936721 - Homo sapiens mRNA; cDNA DKFZp686F0270 (from clone DKFZp686F0270).
BC051283 - Homo sapiens SMAD specific E3 ubiquitin protein ligase 2, mRNA (cDNA clone IMAGE:6455120), containing frame-shift errors.
AY014180 - Homo sapiens E3 ubiquitin ligase Smurf2 mRNA, complete cds.
BC093876 - Homo sapiens SMAD specific E3 ubiquitin protein ligase 2, mRNA (cDNA clone MGC:120911 IMAGE:7939721), complete cds.
BC111945 - Homo sapiens SMAD specific E3 ubiquitin protein ligase 2, mRNA (cDNA clone MGC:138150 IMAGE:8327413), complete cds.
AF301463 - Homo sapiens ubiquitin E3 ligase SMURF2 (SMURF2) mRNA, complete cds.
AF310676 - Homo sapiens E3 ubiquitin ligase SMURF2 mRNA, complete cds.
KJ894567 - Synthetic construct Homo sapiens clone ccsbBroadEn_03961 SMURF2 gene, encodes complete protein.
AB385561 - Synthetic construct DNA, clone: pF1KB8005, Homo sapiens SMURF2 gene for E3 ubiquitin-protein ligase SMURF2, complete cds, without stop codon, in Flexi system.
BC034789 - Homo sapiens cDNA clone IMAGE:4825278.
AK002019 - Homo sapiens cDNA FLJ11157 fis, clone PLACE1006961.
BC009527 - Homo sapiens SMAD specific E3 ubiquitin protein ligase 2, mRNA (cDNA clone IMAGE:3890635), partial cds.
JD448847 - Sequence 429871 from Patent EP1572962.
JD273857 - Sequence 254881 from Patent EP1572962.
DL491798 - Novel nucleic acids.
JD271827 - Sequence 252851 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY66-11 - BMP Signalling Pathway

BioCarta from NCI Cancer Genome Anatomy Project
h_EfpPathway - Estrogen-responsive protein Efp controls cell cycle and breast tumors growth

Reactome (by CSHL, EBI, and GO)

Protein Q9HAU4 (Reactome details) participates in the following event(s):

R-HSA-2176445 SMURF2 binds SMAD2
R-HSA-4641134 SMURF2 binds AXIN
R-HSA-173542 SMURF2 ubiquitinates SMAD2
R-NUL-2176393 SMURF2 ubiquitinates Smad7 and phosphorylated TGFBR1
R-HSA-178208 SMAD7 binds to SMURF2
R-HSA-2179274 SMURF2 binds SMAD3 phosphorylated in the linker region
R-HSA-2179276 SMURF2 monoubiquitinates SMAD3
R-NUL-2169043 Smad7:SMURF2 binds phosphorylated TGFBR1
R-NUL-2167888 Smad7:SMURF2 complex translocates to the cytosol
R-HSA-2167876 SMAD7:SMURF2 complex translocates to the cytosol
R-HSA-4641129 AXIN is ubiquitinated by SMURF2
R-HSA-4608854 SMURF1/2 are recruited to the DVL2:PARD6A complex
R-HSA-5632646 SMURF1/2 bind PTCH1
R-HSA-5635865 SMURF1/2 dissociates from ub-PTCH1
R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-983147 Release of E3 from polyubiquitinated substrate
R-HSA-2169050 SMURFs/NEDD4L ubiquitinate phosphorylated TGFBR1 and SMAD7
R-HSA-2186741 SMAD2/3 activation induces binding of RNF111/SMURF2 to SKI/SKIL
R-HSA-2186747 Ubiquitination of SKI/SKIL by RNF111/SMURF2
R-HSA-201821 I-Smad binds to type I receptor, preventing Smad1/5/8 from being activated
R-HSA-5632648 SMURF1/2 ubiquitinates PTCH1
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-178218 SMAD7:SMURF complex binds to phosphorylated TGFBR1
R-HSA-8952419 SMURFs ubiquitinate RUNX3
R-HSA-6781764 USP15 deubiquitinates SMAD1,SMAD2,SMAD3, SMAD7:SMURF,KEAP1
R-HSA-4608852 SMURF1/2 ubiquitinates PRICKLE1
R-HSA-2173788 Downregulation of TGF-beta receptor signaling
R-HSA-4641257 Degradation of AXIN
R-HSA-2173795 Downregulation of SMAD2/3:SMAD4 transcriptional activity
R-HSA-4608870 Asymmetric localization of PCP proteins
R-HSA-5632684 Hedgehog 'on' state
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-2173789 TGF-beta receptor signaling activates SMADs
R-HSA-201681 TCF dependent signaling in response to WNT
R-HSA-2173793 Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer
R-HSA-201451 Signaling by BMP
R-HSA-4086400 PCP/CE pathway
R-HSA-5358351 Signaling by Hedgehog
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-170834 Signaling by TGF-beta Receptor Complex
R-HSA-195721 Signaling by WNT
R-HSA-8941858 Regulation of RUNX3 expression and activity
R-HSA-212436 Generic Transcription Pathway
R-HSA-5689880 Ub-specific processing proteases
R-HSA-9006936 Signaling by TGF-beta family members
R-HSA-3858494 Beta-catenin independent WNT signaling
R-HSA-162582 Signal Transduction
R-HSA-1280218 Adaptive Immune System
R-HSA-8878159 Transcriptional regulation by RUNX3
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-5688426 Deubiquitination
R-HSA-168256 Immune System
R-HSA-74160 Gene expression (Transcription)
R-HSA-597592 Post-translational protein modification
R-HSA-392499 Metabolism of proteins

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000262435.1, ENST00000262435.10, ENST00000262435.11, ENST00000262435.12, ENST00000262435.13, ENST00000262435.2, ENST00000262435.3, ENST00000262435.4, ENST00000262435.5, ENST00000262435.6, ENST00000262435.7, ENST00000262435.8, ENST00000262435.9, NM_022739, Q52LL1, Q9H260, Q9HAU4, SMUF2_HUMAN, SMURF2 , uc317hah.1, uc317hah.2
UCSC ID: ENST00000262435.14_7
RefSeq Accession: NM_022739.4
Protein: Q9HAU4 (aka SMUF2_HUMAN or SUF2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.