Human Gene STEAP3 (ENST00000393110.7_7) from GENCODE V47lift37
  Description: STEAP3 metalloreductase, transcript variant 1 (from RefSeq NM_182915.3)
Gencode Transcript: ENST00000393110.7_7
Gencode Gene: ENSG00000115107.20_11
Transcript (Including UTRs)
   Position: hg19 chr2:119,981,410-120,023,228 Size: 41,819 Total Exon Count: 6 Strand: +
Coding Region
   Position: hg19 chr2:119,988,589-120,020,914 Size: 32,326 Coding Exon Count: 5 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:119,981,410-120,023,228)mRNA (may differ from genome)Protein (498 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedReactome
UniProtKBWikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: STEA3_HUMAN
DESCRIPTION: RecName: Full=Metalloreductase STEAP3; EC=1.16.1.-; AltName: Full=Dudulin-2; AltName: Full=Six-transmembrane epithelial antigen of prostate 3; AltName: Full=Tumor suppressor-activated pathway protein 6; Short=hTSAP6; AltName: Full=pHyde; Short=hpHyde;
FUNCTION: Endosomal ferrireductase required for efficient transferrin-dependent iron uptake in erythroid cells. Participates in erythroid iron homeostasis by reducing Fe(3+) to Fe(2+). Can also reduce of Cu(2+) to Cu(1+), suggesting that it participates in copper homeostasis. Uses NADP(+) as acceptor. May play a role downstream of p53/TP53 to interface apoptosis and cell cycle progression. Indirectly involved in exosome secretion by facilitating the secretion of proteins such as TCTP.
COFACTOR: FAD (By similarity).
COFACTOR: NADP.
SUBUNIT: Homodimer. Interacts with BNIP3L, MYT1, RHBDL4/RHBDD1 and TCTP.
SUBCELLULAR LOCATION: Endosome membrane; Multi-pass membrane protein (By similarity). Note=Localizes to vesicular-like structures at the plasma membrane and around the nucleus.
TISSUE SPECIFICITY: Expressed in adult bone marrow, placenta, liver, skeletal muscle and pancreas. Down-regulated in hepatocellular carcinoma.
INDUCTION: By p53/TP53.
PTM: Proteolytically cleaved by RHBDL4/RHBDD1. RHBDL4/RHBDD1- induced cleavage occurs at multiple sites in a glycosylation- independent manner.
PTM: Glycosylated.
SIMILARITY: Belongs to the STEAP family.
SIMILARITY: Contains 1 ferric oxidoreductase domain.
CAUTION: Was initially thought to have tumor suppressor function in prostate cancer. However, it was shown that it is probably not the case (PubMed:12866033).

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: STEAP3
Diseases sorted by gene-association score: anemia, hypochromic microcytic, with iron overload 2* (1420)
* = Manually curated disease association

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 72.41 RPKM in Liver
Total median expression: 306.51 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -173.60448-0.388 Picture PostScript Text
3' UTR -852.102314-0.368 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR013130 - Fe3_Rdtase_TM_dom
IPR016040 - NAD(P)-bd_dom
IPR004455 - NADP_OxRdtase_F420

Pfam Domains:
PF01794 - Ferric reductase like transmembrane component
PF03807 - NADP oxidoreductase coenzyme F420-dependent

SCOP Domains:
51735 - NAD(P)-binding Rossmann-fold domains
51905 - FAD/NAD(P)-binding domain
52440 - PreATP-grasp domain
51984 - MurCD N-terminal domain

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2VNS - X-ray MuPIT 2VQ3 - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q658P3
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005515 protein binding
GO:0008823 cupric reductase activity
GO:0016491 oxidoreductase activity
GO:0016723 oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor
GO:0042802 identical protein binding
GO:0046872 metal ion binding
GO:0052851 ferric-chelate reductase (NADPH) activity

Biological Process:
GO:0006811 ion transport
GO:0006915 apoptotic process
GO:0007049 cell cycle
GO:0009306 protein secretion
GO:0015677 copper ion import
GO:0033572 transferrin transport
GO:0042981 regulation of apoptotic process
GO:0055072 iron ion homeostasis
GO:0055114 oxidation-reduction process
GO:0098706 ferric iron import across plasma membrane

Cellular Component:
GO:0005737 cytoplasm
GO:0005768 endosome
GO:0005771 multivesicular body
GO:0005887 integral component of plasma membrane
GO:0010008 endosome membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  AL833624 - Homo sapiens mRNA; cDNA DKFZp686K0573 (from clone DKFZp686K0573).
AY029585 - Homo sapiens dudulin 2 mRNA, complete cds.
AF423424 - Homo sapiens six transmembrane prostate protein 3 mRNA, complete cds.
AK001691 - Homo sapiens cDNA FLJ10829 fis, clone NT2RP4001138.
AY214461 - Homo sapiens TSAP6 mRNA, complete cds.
BX538047 - Homo sapiens mRNA; cDNA DKFZp686H07150 (from clone DKFZp686H07150).
AK291608 - Homo sapiens cDNA FLJ77562 complete cds, highly similar to Homo sapiens STEAP family member 3 (STEAP3), transcript variant 1, mRNA.
AF238864 - Homo sapiens tumor suppressor pHyde mRNA, complete cds.
AF262322 - Homo sapiens pHYDE II mRNA, complete cds.
AY082673 - Homo sapiens pHyde mRNA, complete cds.
BC095421 - Homo sapiens STEAP family member 3, mRNA (cDNA clone MGC:110951 IMAGE:30336214), complete cds.
JD422378 - Sequence 403402 from Patent EP1572962.
BC042150 - Homo sapiens STEAP family member 3, mRNA (cDNA clone MGC:52186 IMAGE:4586693), complete cds.
CU692068 - Synthetic construct Homo sapiens gateway clone IMAGE:100022468 5' read STEAP3 mRNA.
AM392543 - Synthetic construct Homo sapiens clone IMAGE:100002982 for hypothetical protein (STEAP3 gene).
KJ906219 - Synthetic construct Homo sapiens clone ccsbBroadEn_15889 STEAP3 gene, encodes complete protein.
AK024163 - Homo sapiens cDNA FLJ14101 fis, clone MAMMA1000859.
JD563975 - Sequence 544999 from Patent EP1572962.
JD089947 - Sequence 70971 from Patent EP1572962.
JD224651 - Sequence 205675 from Patent EP1572962.
JD495367 - Sequence 476391 from Patent EP1572962.
JD261810 - Sequence 242834 from Patent EP1572962.
JD400540 - Sequence 381564 from Patent EP1572962.
JD483205 - Sequence 464229 from Patent EP1572962.
JD434119 - Sequence 415143 from Patent EP1572962.
JD080023 - Sequence 61047 from Patent EP1572962.
JD227829 - Sequence 208853 from Patent EP1572962.
JD472850 - Sequence 453874 from Patent EP1572962.
JD092759 - Sequence 73783 from Patent EP1572962.
JD310888 - Sequence 291912 from Patent EP1572962.
JD110358 - Sequence 91382 from Patent EP1572962.
JD280203 - Sequence 261227 from Patent EP1572962.
JD159560 - Sequence 140584 from Patent EP1572962.
JD056684 - Sequence 37708 from Patent EP1572962.
JD439913 - Sequence 420937 from Patent EP1572962.
JD392856 - Sequence 373880 from Patent EP1572962.
JD492761 - Sequence 473785 from Patent EP1572962.
JD515763 - Sequence 496787 from Patent EP1572962.
JD470458 - Sequence 451482 from Patent EP1572962.
JD303752 - Sequence 284776 from Patent EP1572962.
JD367996 - Sequence 349020 from Patent EP1572962.
JD115356 - Sequence 96380 from Patent EP1572962.
JD310640 - Sequence 291664 from Patent EP1572962.
JD064797 - Sequence 45821 from Patent EP1572962.
JD395924 - Sequence 376948 from Patent EP1572962.
JD216254 - Sequence 197278 from Patent EP1572962.
JD513072 - Sequence 494096 from Patent EP1572962.
JD521730 - Sequence 502754 from Patent EP1572962.
JD272616 - Sequence 253640 from Patent EP1572962.
JD253704 - Sequence 234728 from Patent EP1572962.
JD063565 - Sequence 44589 from Patent EP1572962.
JD260537 - Sequence 241561 from Patent EP1572962.
JD267984 - Sequence 249008 from Patent EP1572962.
JD449620 - Sequence 430644 from Patent EP1572962.
JD216422 - Sequence 197446 from Patent EP1572962.
JD512968 - Sequence 493992 from Patent EP1572962.
JD124711 - Sequence 105735 from Patent EP1572962.
JD261359 - Sequence 242383 from Patent EP1572962.
JD103731 - Sequence 84755 from Patent EP1572962.
JD062742 - Sequence 43766 from Patent EP1572962.
JD204974 - Sequence 185998 from Patent EP1572962.
JD185972 - Sequence 166996 from Patent EP1572962.
JD252054 - Sequence 233078 from Patent EP1572962.
JD046050 - Sequence 27074 from Patent EP1572962.
JD342755 - Sequence 323779 from Patent EP1572962.
JD323755 - Sequence 304779 from Patent EP1572962.
JD404332 - Sequence 385356 from Patent EP1572962.
JD519245 - Sequence 500269 from Patent EP1572962.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q658P3 (Reactome details) participates in the following event(s):

R-HSA-6801195 STEAP3 binds BNIP3L
R-HSA-917811 STEAP3-like proteins reduce Fe3+ to Fe2+
R-HSA-6803204 TP53 Regulates Transcription of Genes Involved in Cytochrome C Release
R-HSA-5633008 TP53 Regulates Transcription of Cell Death Genes
R-HSA-917977 Transferrin endocytosis and recycling
R-HSA-3700989 Transcriptional Regulation by TP53
R-HSA-917937 Iron uptake and transport
R-HSA-212436 Generic Transcription Pathway
R-HSA-382551 Transport of small molecules
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A8K6E3, ENST00000393110.1, ENST00000393110.2, ENST00000393110.3, ENST00000393110.4, ENST00000393110.5, ENST00000393110.6, NM_182915, Q4VBR2, Q4ZG36, Q53SQ8, Q658P3, Q7Z389, Q86SF6, Q8NEW6, Q8TDP3, Q8TF03, Q9NVB5, STEA3_HUMAN, TSAP6, uc318vpx.1, uc318vpx.2
UCSC ID: ENST00000393110.7_7
RefSeq Accession: NM_182915.3
Protein: Q658P3 (aka STEA3_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.