Human Gene TMEM37 (ENST00000306406.5_7) from GENCODE V47lift37
  Description: transmembrane protein 37 (from RefSeq NM_183240.3)
Gencode Transcript: ENST00000306406.5_7
Gencode Gene: ENSG00000171227.7_11
Transcript (Including UTRs)
   Position: hg19 chr2:120,189,430-120,196,080 Size: 6,651 Total Exon Count: 2 Strand: +
Coding Region
   Position: hg19 chr2:120,189,480-120,195,016 Size: 5,537 Coding Exon Count: 2 

Page IndexSequence and LinksUniProtKB CommentsPrimersMalaCardsCTD
Gene AllelesRNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther Species
GO AnnotationsmRNA DescriptionsOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr2:120,189,430-120,196,080)mRNA (may differ from genome)Protein (190 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMalacardsMGIOMIMPubMedUniProtKB
BioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: CCGL_HUMAN
DESCRIPTION: RecName: Full=Voltage-dependent calcium channel gamma-like subunit; AltName: Full=Neuronal voltage-gated calcium channel gamma-like subunit; AltName: Full=Transmembrane protein 37;
FUNCTION: Thought to stabilize the calcium channel in an inactivated (closed) state. Modulates calcium current when coexpressed with CACNA1G (By similarity).
SUBUNIT: The L-type calcium channel is composed of five subunits: alpha-1, alpha-2/delta, beta and gamma (By similarity).
SUBCELLULAR LOCATION: Membrane; Multi-pass membrane protein (Potential).
SIMILARITY: Belongs to the PMP-22/EMP/MP20 family. CACNG subfamily.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  MalaCards Disease Associations
  MalaCards Gene Search: TMEM37
Diseases sorted by gene-association score: vulvitis (1), poland syndrome (1)

-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene
  • D013749 Tetrachlorodibenzodioxin
  • D008767 Methylmercury Compounds
  • D013739 Testosterone
  • C025589 ochratoxin A
  • C014024 2,4,5,2',4',5'-hexachlorobiphenyl
  • C049584 2-amino-1-methyl-6-phenylimidazo(4,5-b)pyridine
  • C023035 3,4,5,3',4'-pentachlorobiphenyl
  • C472791 3-(4'-hydroxy-3'-adamantylbiphenyl-4-yl)acrylic acid
  • C009505 4,4'-diaminodiphenylmethane
  • D015127 9,10-Dimethyl-1,2-benzanthracene
          more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 36.24 RPKM in Kidney - Cortex
Total median expression: 249.98 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -21.9050-0.438 Picture PostScript Text
3' UTR -383.301064-0.360 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF15108 - Voltage-dependent calcium channel gamma-like subunit protein family

ModBase Predicted Comparative 3D Structure on Q8WXS4
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
Gene SorterGene Sorter    
 RGDEnsembl   
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0005244 voltage-gated ion channel activity
GO:0005262 calcium channel activity

Biological Process:
GO:0006811 ion transport
GO:0006816 calcium ion transport
GO:0034765 regulation of ion transmembrane transport
GO:0070588 calcium ion transmembrane transport

Cellular Component:
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC046362 - Homo sapiens transmembrane protein 37, mRNA (cDNA clone MGC:50757 IMAGE:5221396), complete cds.
AF361356 - Homo sapiens voltage-dependent calcium channel gamma subunit-like protein mRNA, complete cds.
KJ903810 - Synthetic construct Homo sapiens clone ccsbBroadEn_13204 TMEM37 gene, encodes complete protein.
AK026464 - Homo sapiens cDNA: FLJ22811 fis, clone KAIA2944.
JD204322 - Sequence 185346 from Patent EP1572962.
JD168367 - Sequence 149391 from Patent EP1572962.
JD408993 - Sequence 390017 from Patent EP1572962.
JD493877 - Sequence 474901 from Patent EP1572962.
JD230598 - Sequence 211622 from Patent EP1572962.
JD508863 - Sequence 489887 from Patent EP1572962.
JD091749 - Sequence 72773 from Patent EP1572962.
JD081352 - Sequence 62376 from Patent EP1572962.
JD142964 - Sequence 123988 from Patent EP1572962.
JD202300 - Sequence 183324 from Patent EP1572962.
JD122655 - Sequence 103679 from Patent EP1572962.
JD377135 - Sequence 358159 from Patent EP1572962.
JD162439 - Sequence 143463 from Patent EP1572962.
JD283879 - Sequence 264903 from Patent EP1572962.
JD296300 - Sequence 277324 from Patent EP1572962.
JD131848 - Sequence 112872 from Patent EP1572962.
JD343545 - Sequence 324569 from Patent EP1572962.
JD482941 - Sequence 463965 from Patent EP1572962.
JD047490 - Sequence 28514 from Patent EP1572962.
JD553933 - Sequence 534957 from Patent EP1572962.
JD535914 - Sequence 516938 from Patent EP1572962.

-  Other Names for This Gene
  Alternate Gene Symbols: CCGL_HUMAN, ENST00000306406.1, ENST00000306406.2, ENST00000306406.3, ENST00000306406.4, NM_183240, PR , Q8WXS4, TMEM37 , uc317nvr.1, uc317nvr.2
UCSC ID: ENST00000306406.5_7
RefSeq Accession: NM_183240.3
Protein: Q8WXS4 (aka CCGL_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.