Human Gene UBE2J2 (ENST00000349431.11_7) from GENCODE V47lift37
  Description: ubiquitin conjugating enzyme E2 J2, transcript variant 2 (from RefSeq NM_058167.3)
Gencode Transcript: ENST00000349431.11_7
Gencode Gene: ENSG00000160087.21_12
Transcript (Including UTRs)
   Position: hg19 chr1:1,189,292-1,209,234 Size: 19,943 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chr1:1,190,583-1,203,372 Size: 12,790 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
PathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chr1:1,189,292-1,209,234)mRNA (may differ from genome)Protein (259 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIPubMedReactomeUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UB2J2_HUMAN
DESCRIPTION: RecName: Full=Ubiquitin-conjugating enzyme E2 J2; EC=6.3.2.19; AltName: Full=Non-canonical ubiquitin-conjugating enzyme 2; Short=NCUBE-2;
FUNCTION: Catalyzes the covalent attachment of ubiquitin to other proteins. Seems to function in the selective degradation of misfolded membrane proteins from the endoplasmic reticulum (ERAD) (By similarity).
CATALYTIC ACTIVITY: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
PATHWAY: Protein modification; protein ubiquitination.
SUBCELLULAR LOCATION: Endoplasmic reticulum membrane; Single-pass type IV membrane protein (By similarity).
SIMILARITY: Belongs to the ubiquitin-conjugating enzyme family.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 44.36 RPKM in Testis
Total median expression: 575.33 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -102.30189-0.541 Picture PostScript Text
3' UTR -556.601291-0.431 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR000608 - UBQ-conjugat_E2
IPR016135 - UBQ-conjugating_enzyme/RWD

Pfam Domains:
PF00179 - Ubiquitin-conjugating enzyme

SCOP Domains:
54495 - UBC-like

Protein Data Bank (PDB) 3-D Structure
MuPIT help
2F4W - X-ray MuPIT


ModBase Predicted Comparative 3D Structure on Q8N2K1
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details    
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0005524 ATP binding
GO:0016740 transferase activity
GO:0031625 ubiquitin protein ligase binding
GO:0061630 ubiquitin protein ligase activity
GO:0061631 ubiquitin conjugating enzyme activity

Biological Process:
GO:0000209 protein polyubiquitination
GO:0006986 response to unfolded protein
GO:0016567 protein ubiquitination
GO:0030433 ER-associated ubiquitin-dependent protein catabolic process
GO:1903955 positive regulation of protein targeting to mitochondrion

Cellular Component:
GO:0000151 ubiquitin ligase complex
GO:0005783 endoplasmic reticulum
GO:0005789 endoplasmic reticulum membrane
GO:0016020 membrane
GO:0016021 integral component of membrane


-  Descriptions from all associated GenBank mRNAs
  BC094777 - Homo sapiens ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast), mRNA (cDNA clone MGC:104681 IMAGE:30340049), complete cds.
AK098803 - Homo sapiens cDNA FLJ25937 fis, clone JTH07151.
AK056065 - Homo sapiens cDNA FLJ31503 fis, clone NT2NE2005720, highly similar to Mus musculus Ubc6p homolog mRNA.
BC027728 - Homo sapiens ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast), mRNA (cDNA clone IMAGE:4645540), partial cds.
BC052579 - Homo sapiens ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast), mRNA (cDNA clone IMAGE:5015170), partial cds.
AF116687 - Homo sapiens PRO2121 mRNA, complete cds.
JD076536 - Sequence 57560 from Patent EP1572962.
JD472144 - Sequence 453168 from Patent EP1572962.
JD394726 - Sequence 375750 from Patent EP1572962.
JD476389 - Sequence 457413 from Patent EP1572962.
JD057181 - Sequence 38205 from Patent EP1572962.
JD173399 - Sequence 154423 from Patent EP1572962.
JD191956 - Sequence 172980 from Patent EP1572962.
JD126199 - Sequence 107223 from Patent EP1572962.
JD436901 - Sequence 417925 from Patent EP1572962.
JD216319 - Sequence 197343 from Patent EP1572962.
JD425757 - Sequence 406781 from Patent EP1572962.
AK075017 - Homo sapiens cDNA FLJ90536 fis, clone OVARC1000105, highly similar to Ubiquitin conjugating enzyme E2.
JD192407 - Sequence 173431 from Patent EP1572962.
JD271022 - Sequence 252046 from Patent EP1572962.
JD230455 - Sequence 211479 from Patent EP1572962.
JD380124 - Sequence 361148 from Patent EP1572962.
JD427117 - Sequence 408141 from Patent EP1572962.
JD466781 - Sequence 447805 from Patent EP1572962.
JD276749 - Sequence 257773 from Patent EP1572962.
JD521315 - Sequence 502339 from Patent EP1572962.
BC113430 - Homo sapiens ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast), mRNA (cDNA clone MGC:141990 IMAGE:8322482), complete cds.
BC143657 - Homo sapiens ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast), mRNA (cDNA clone MGC:177188 IMAGE:9052171), complete cds.
AK291935 - Homo sapiens cDNA FLJ77503 complete cds, highly similar to Homo sapiens ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) (UBE2J2), transcript variant 2, mRNA.
BC104890 - Homo sapiens ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast), mRNA (cDNA clone MGC:132550 IMAGE:8143893), complete cds.
AF296658 - Homo sapiens ubiquitin conjugating enzyme 6 mRNA, complete cds.
JD167494 - Sequence 148518 from Patent EP1572962.
JD540600 - Sequence 521624 from Patent EP1572962.
HQ258753 - Synthetic construct Homo sapiens clone IMAGE:100072783 ubiquitin-conjugating enzyme E2, J2 (UBC6 homolog, yeast) (UBE2J2), transcript variant 2 (UBE2J2) gene, encodes complete protein.
KJ895335 - Synthetic construct Homo sapiens clone ccsbBroadEn_04729 UBE2J2 gene, encodes complete protein.
KJ900056 - Synthetic construct Homo sapiens clone ccsbBroadEn_09450 UBE2J2 gene, encodes complete protein.

-  Biochemical and Signaling Pathways
  BioCyc Knowledge Library
PWY-7511 - protein ubiquitination

Reactome (by CSHL, EBI, and GO)

Protein Q8N2K1 (Reactome details) participates in the following event(s):

R-HSA-983152 Transfer of ubiquitin from E1 to E2
R-HSA-983140 Transfer of Ub from E2 to substrate and release of E2
R-HSA-983157 Interaction of E3 with substrate and E2-Ub complex
R-HSA-8943083 US11:HLA binds DERL1:TMEM129:Ub:UBE2J2,UBE2K:VIMP:VCP
R-HSA-8866654 E3 ubiquitin ligases ubiquitinate target proteins
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
R-HSA-8852135 Protein ubiquitination
R-HSA-983169 Class I MHC mediated antigen processing & presentation
R-HSA-597592 Post-translational protein modification
R-HSA-1280218 Adaptive Immune System
R-HSA-392499 Metabolism of proteins
R-HSA-168256 Immune System

-  Other Names for This Gene
  Alternate Gene Symbols: A8MYC7, ENST00000349431.1, ENST00000349431.10, ENST00000349431.2, ENST00000349431.3, ENST00000349431.4, ENST00000349431.5, ENST00000349431.6, ENST00000349431.7, ENST00000349431.8, ENST00000349431.9, NCUBE2, NM_058167, Q504T9, Q8N2K1, Q96N26, Q96T84, UB2J2_HUMAN, uc317xvd.1, uc317xvd.2
UCSC ID: ENST00000349431.11_7
RefSeq Accession: NM_058167.3
Protein: Q8N2K1 (aka UB2J2_HUMAN or UBJ2_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.