Human Gene UPRT (ENST00000373383.9_4) from GENCODE V47lift37
  Description: uracil phosphoribosyltransferase homolog, transcript variant 1 (from RefSeq NM_145052.4)
Gencode Transcript: ENST00000373383.9_4
Gencode Gene: ENSG00000094841.14_8
Transcript (Including UTRs)
   Position: hg19 chrX:74,493,920-74,524,720 Size: 30,801 Total Exon Count: 7 Strand: +
Coding Region
   Position: hg19 chrX:74,494,090-74,523,346 Size: 29,257 Coding Exon Count: 7 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionRNA StructureProtein StructureOther SpeciesGO AnnotationsmRNA Descriptions
Other NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:74,493,920-74,524,720)mRNA (may differ from genome)Protein (309 aa)
Gene SorterGenome BrowserOther Species FASTAGene interactionsTable SchemaAlphaFold
BioGPSEnsemblEntrez GeneExonPrimerGeneCardsHGNC
MGIOMIMPubMedUniProtKBBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UPP_HUMAN
DESCRIPTION: RecName: Full=Uracil phosphoribosyltransferase homolog;
SUBCELLULAR LOCATION: Cytoplasm. Nucleus.
TISSUE SPECIFICITY: Highly expressed in leukocytes, liver, spleen and thymus, with lower expression in brain, lung and skeletal muscle.
SIMILARITY: Belongs to the UPRTase family.
CAUTION: No UPRTase activity has been detected in vitro (PubMed:17384901) and the uracil binding region known from UPRTases is missing.

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 6.42 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 171.74 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -57.80170-0.340 Picture PostScript Text
3' UTR -341.201374-0.248 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  Pfam Domains:
PF14681 - Uracil phosphoribosyltransferase

SCOP Domains:
53271 - PRTase-like

ModBase Predicted Comparative 3D Structure on Q96BW1
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The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
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-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0000166 nucleotide binding
GO:0004849 uridine kinase activity
GO:0005515 protein binding
GO:0005525 GTP binding

Biological Process:
GO:0006206 pyrimidine nucleobase metabolic process
GO:0006222 UMP biosynthetic process
GO:0007565 female pregnancy
GO:0007595 lactation
GO:0009116 nucleoside metabolic process
GO:0032868 response to insulin
GO:0043097 pyrimidine nucleoside salvage

Cellular Component:
GO:0005634 nucleus
GO:0005737 cytoplasm
GO:0005829 cytosol


-  Descriptions from all associated GenBank mRNAs
  AY643714 - Homo sapiens UPP mRNA, complete cds.
AK309951 - Homo sapiens cDNA, FLJ99992.
AK056354 - Homo sapiens cDNA FLJ31792 fis, clone NT2RI2008791.
BC015116 - Homo sapiens uracil phosphoribosyltransferase (FUR1) homolog (S. cerevisiae), mRNA (cDNA clone MGC:23937 IMAGE:3930177), complete cds.
CR749336 - Homo sapiens mRNA; cDNA DKFZp781E1243 (from clone DKFZp781E1243).
AK293024 - Homo sapiens cDNA FLJ77390 complete cds.
JD067817 - Sequence 48841 from Patent EP1572962.
JD553067 - Sequence 534091 from Patent EP1572962.
CU677217 - Synthetic construct Homo sapiens gateway clone IMAGE:100018824 5' read UPRT mRNA.
KJ900189 - Synthetic construct Homo sapiens clone ccsbBroadEn_09583 UPRT gene, encodes complete protein.
JD326969 - Sequence 307993 from Patent EP1572962.
JD094230 - Sequence 75254 from Patent EP1572962.
JD115314 - Sequence 96338 from Patent EP1572962.
JD432133 - Sequence 413157 from Patent EP1572962.
LF211622 - JP 2014500723-A/19125: Polycomb-Associated Non-Coding RNAs.
JD113422 - Sequence 94446 from Patent EP1572962.
JD226357 - Sequence 207381 from Patent EP1572962.
JD147568 - Sequence 128592 from Patent EP1572962.
JD107081 - Sequence 88105 from Patent EP1572962.
LF382059 - JP 2014500723-A/189562: Polycomb-Associated Non-Coding RNAs.
JD549399 - Sequence 530423 from Patent EP1572962.
JD172372 - Sequence 153396 from Patent EP1572962.
JD312462 - Sequence 293486 from Patent EP1572962.
JD384862 - Sequence 365886 from Patent EP1572962.
JD263712 - Sequence 244736 from Patent EP1572962.
JD490548 - Sequence 471572 from Patent EP1572962.
MA447199 - JP 2018138019-A/19125: Polycomb-Associated Non-Coding RNAs.
MA617636 - JP 2018138019-A/189562: Polycomb-Associated Non-Coding RNAs.

-  Other Names for This Gene
  Alternate Gene Symbols: ENST00000373383.1, ENST00000373383.2, ENST00000373383.3, ENST00000373383.4, ENST00000373383.5, ENST00000373383.6, ENST00000373383.7, ENST00000373383.8, NM_145052, Q5JRL1, Q5JRL3, Q68DN0, Q96BW1, Q96MW2, uc318kso.1, uc318kso.2, UPP_HUMAN
UCSC ID: ENST00000373383.9_4
RefSeq Accession: NM_145052.4
Protein: Q96BW1 (aka UPP_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.