Human Gene UXT (ENST00000333119.8_6) from GENCODE V47lift37
  Description: ubiquitously expressed prefoldin like chaperone, transcript variant 4 (from RefSeq NR_045560.2)
Gencode Transcript: ENST00000333119.8_6
Gencode Gene: ENSG00000126756.12_10
Transcript (Including UTRs)
   Position: hg19 chrX:47,511,195-47,518,579 Size: 7,385 Total Exon Count: 7 Strand: -
Coding Region
   Position: hg19 chrX:47,511,241-47,518,326 Size: 7,086 Coding Exon Count: 6 

Page IndexSequence and LinksUniProtKB CommentsPrimersCTDGene Alleles
RNA-Seq ExpressionMicroarray ExpressionRNA StructureProtein StructureOther SpeciesGO Annotations
mRNA DescriptionsPathwaysOther NamesModel InformationMethods
Data last updated at UCSC: 2024-08-22 23:36:26

-  Sequence and Links to Tools and Databases
 
Genomic Sequence (chrX:47,511,195-47,518,579)mRNA (may differ from genome)Protein (157 aa)
Gene SorterGenome BrowserOther Species FASTAVisiGeneGene interactionsTable Schema
AlphaFoldBioGPSEnsemblEntrez GeneExonPrimerGeneCards
HGNCMGIOMIMPubMedReactomeUniProtKB
WikipediaBioGrid CRISPR DB

-  Comments and Description Text from UniProtKB
  ID: UXT_HUMAN
DESCRIPTION: RecName: Full=Protein UXT; AltName: Full=Androgen receptor trapped clone 27 protein; Short=ART-27; AltName: Full=Ubiquitously expressed transcript protein;
FUNCTION: Involved in gene transcription regulation. Acts in concert with the corepressor URI1 to regulate androgen receptor transcription (AR). AR N-terminus-associated coactivator which may play a role in facilitating receptor-induced transcriptional activation (PubMed:11854421). Potential component of mitochondrial-associated LRPPRC, a multidomain organizer that potentially integrates mitochondria and the microtubular cytoskeleton with chromosome remodeling (PubMed:11827465). Increasing concentrations of UXT contributes to progressive aggregation of mitochondria and cell death potentially through its association with LRPPRC (PubMed:17554592). May be a nuclear chaperone that promotes formation of the NF-kappa-B enhanceosome and which is essential for its nuclear function (PubMed:17620405). Suppresses cell transformation and it might mediate this function by interaction and inhibition of the biological activity of cell proliferation and survival stimulatory factors like MECOM (PubMed:17635584). Together with URI1, associates with chromatin to the NKX3-1 promoter region.
SUBUNIT: Homohexamer. Interacts with LRPPRC. Interacts with AR N- terminus. In the nucleus interacts specifically with RELA and forms a dynamic complex with NF-kappa-B and is recruited to the NF-kappa-B enhanceosome upon stimulation. Interacts with MECOM and URI1.
INTERACTION: Q03112:MECOM; NbExp=5; IntAct=EBI-357355, EBI-1384862; Q04206:RELA; NbExp=5; IntAct=EBI-357355, EBI-73886;
SUBCELLULAR LOCATION: Cytoplasm. Cytoplasm, cytoskeleton. Cytoplasm, cytoskeleton, centrosome. Nucleus.
TISSUE SPECIFICITY: Ubiquitous. Expressed in prostate epithelial cells. Overexpressed in a number of tumor tissues (PubMed:16221885). Highest levels in the heart, skeletal muscle, pancreas, kidney, liver, adrenal gland, peripheral blood leukocytes, lymph node, prostate, and thyroid and the lowest levels in bladder and uterus.
SIMILARITY: Belongs to the UXT family.
SEQUENCE CAUTION: Sequence=AAD39840.1; Type=Erroneous initiation; Note=Translation N-terminally shortened; Sequence=CAI42447.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;

-  Primer design for this transcript
 

Primer3Plus can design qPCR Primers that straddle exon-exon-junctions, which amplify only cDNA, not genomic DNA.
Click here to load the transcript sequence and exon structure into Primer3Plus

Exonprimer can design one pair of Sanger sequencing primers around every exon, located in non-genic sequence.
Click here to open Exonprimer with this transcript

To design primers for a non-coding sequence, zoom to a region of interest and select from the drop-down menu: View > In External Tools > Primer3


-  Comparative Toxicogenomics Database (CTD)
  The following chemicals interact with this gene           more ... click here to view the complete list

+  Common Gene Haplotype Alleles
  Press "+" in the title bar above to open this section.

-  RNA-Seq Expression Data from GTEx (53 Tissues, 570 Donors)
  Highest median expression: 80.68 RPKM in Cells - EBV-transformed lymphocytes
Total median expression: 1898.31 RPKM



View in GTEx track of Genome Browser    View at GTEx portal     View GTEx Body Map

+  Microarray Expression Data
  Press "+" in the title bar above to open this section.

-  mRNA Secondary Structure of 3' and 5' UTRs
 
RegionFold EnergyBasesEnergy/Base
Display As
5' UTR -18.4075-0.245 Picture PostScript Text
3' UTR -4.3046-0.093 Picture PostScript Text

The RNAfold program from the Vienna RNA Package is used to perform the secondary structure predictions and folding calculations. The estimated folding energy is in kcal/mol. The more negative the energy, the more secondary structure the RNA is likely to have.

-  Protein Domain and Structure Information
  InterPro Domains: Graphical view of domain structure
IPR003994 - PFD_UXT
IPR009053 - Prefoldin
IPR004127 - Prefoldin_subunit

Pfam Domains:
PF02996 - Prefoldin subunit

SCOP Domains:
46579 - Prefoldin

ModBase Predicted Comparative 3D Structure on Q9UBK9
FrontTopSide
The pictures above may be empty if there is no ModBase structure for the protein. The ModBase structure frequently covers just a fragment of the protein. You may be asked to log onto ModBase the first time you click on the pictures. It is simplest after logging in to just click on the picture again to get to the specific info on that model.

-  Orthologous Genes in Other Species
  Orthologies between human, mouse, and rat are computed by taking the best BLASTP hit, and filtering out non-syntenic hits. For more distant species reciprocal-best BLASTP hits are used. Note that the absence of an ortholog in the table below may reflect incomplete annotations in the other species rather than a true absence of the orthologous gene.
MouseRatZebrafishD. melanogasterC. elegansS. cerevisiae
No orthologNo orthologNo orthologNo orthologNo orthologNo ortholog
Gene DetailsGene Details Gene Details  
Gene SorterGene Sorter Gene Sorter  
 RGD    
      
      

-  Gene Ontology (GO) Annotations with Structured Vocabulary
  Molecular Function:
GO:0001106 RNA polymerase II transcription corepressor activity
GO:0003682 chromatin binding
GO:0005515 protein binding
GO:0008017 microtubule binding
GO:0048487 beta-tubulin binding
GO:0051015 actin filament binding

Biological Process:
GO:0000122 negative regulation of transcription from RNA polymerase II promoter
GO:0000226 microtubule cytoskeleton organization
GO:0006351 transcription, DNA-templated
GO:0006355 regulation of transcription, DNA-templated
GO:0006915 apoptotic process
GO:0007098 centrosome cycle
GO:0047497 mitochondrion transport along microtubule
GO:0070317 negative regulation of G0 to G1 transition

Cellular Component:
GO:0000922 spindle pole
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005813 centrosome
GO:0005815 microtubule organizing center
GO:0005856 cytoskeleton
GO:0000930 gamma-tubulin complex


-  Descriptions from all associated GenBank mRNAs
  LF211440 - JP 2014500723-A/18943: Polycomb-Associated Non-Coding RNAs.
BC000720 - Homo sapiens ubiquitously-expressed transcript, mRNA (cDNA clone MGC:1473 IMAGE:3505415), complete cds.
BC008890 - Homo sapiens ubiquitously-expressed transcript, mRNA (cDNA clone MGC:19543 IMAGE:3959862), complete cds.
AF092737 - Homo sapiens ubiquitously expressed transcript (UXT) mRNA, complete cds.
AF083241 - Homo sapiens HSPC024 mRNA, complete cds.
AK223320 - Homo sapiens mRNA, ubiquitously-expressed transcript isoform 1 variant, clone: TMS05133.
LF379620 - JP 2014500723-A/187123: Polycomb-Associated Non-Coding RNAs.
AF083242 - Homo sapiens HSPC024-iso mRNA, complete cds.
AK312072 - Homo sapiens cDNA, FLJ92353, Homo sapiens ubiquitously-expressed transcript (UXT), transcriptvariant 2, mRNA.
KJ892529 - Synthetic construct Homo sapiens clone ccsbBroadEn_01923 UXT gene, encodes complete protein.
MA447017 - JP 2018138019-A/18943: Polycomb-Associated Non-Coding RNAs.
MA615197 - JP 2018138019-A/187123: Polycomb-Associated Non-Coding RNAs.

-  Biochemical and Signaling Pathways
  Reactome (by CSHL, EBI, and GO)

Protein Q9UBK9 (Reactome details) participates in the following event(s):

R-HSA-8953750 Transcriptional Regulation by E2F6
R-HSA-212436 Generic Transcription Pathway
R-HSA-73857 RNA Polymerase II Transcription
R-HSA-74160 Gene expression (Transcription)

-  Other Names for This Gene
  Alternate Gene Symbols: A0A0C4DFR8, B2R561, ENST00000333119.1, ENST00000333119.2, ENST00000333119.3, ENST00000333119.4, ENST00000333119.5, ENST00000333119.6, ENST00000333119.7, HSPC024, NR_045560, Q5JZG3, Q9UBK9, Q9Y6E5, uc317tpj.1, uc317tpj.2, UXT_HUMAN
UCSC ID: ENST00000333119.8_6
RefSeq Accession: NM_004182.4
Protein: Q9UBK9 (aka UXT_HUMAN)

-  Gene Model Information
  Click here for a detailed description of the fields of the table above.

-  Methods, Credits, and Use Restrictions
  Click here for details on how this gene model was made and data restrictions if any.