Gene interactions and pathways from curated databases and text-mining
J Biol Chem 2002, PMID: 12050152

A novel transactivating factor that regulates interferon-gamma-dependent gene expression.

Hu, Junbo; Meng, Qingjun; Roy, Sanjit K; Raha, Abhijit; Hu, Jiadi; Zhang, Jun; Hashimoto, Katsuyuki; Kalvakolanu, Dhananjaya V

We have previously identified a novel interferon (IFN)-stimulated cis-acting enhancer element, gamma-IFN-activated transcriptional element (GATE). GATE differs from the known IFN-stimulated elements in its primary sequence. Preliminary analysis has indicated that the GATE-dependent transcriptional response requires the binding of novel transacting factors. A cDNA expression library derived from an IFN-gamma-stimulated murine macrophage cell line was screened with a (32)P-labeled GATE probe to identify the potential GATE-binding factors. A cDNA coding for a novel transcription-activating factor was identified. Based on its discovery, we named it as GATE-binding factor-1 (GBF-1). GBF-1 homologs are present in mouse, human, monkey, and Drosophila. It activates transcription from reporter genes carrying GATE. It possesses a strong transactivating activity but has a weak DNA binding property. GBF-1 is expressed in most tissues with relatively higher steady-state levels in heart, liver, kidney, and brain. Its expression is induced by IFN-gamma treatment. GBF-1 is present in both cytosolic and nuclear compartments. These studies thus identify a novel transactivating factor in IFN signaling pathways.

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Text Mining Data

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Manually curated Databases

  • NCI Pathway Database IFN-gamma pathway: CEBPB/PTGES2/Cbp/p300 complex (CEBPB-PTGES2-EP300_CREBBP) → IRF9 (IRF9) (transcription, activates)
    Evidence: mutant phenotype, reporter gene, other species
In total, 9 gene pairs are associated to this article in curated databases