Schema for all_mrna
  Database: ailMel1    Primary Table: all_mrna    Row Count: 185   Data last updated: 2019-12-04
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 600smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 498int(10) unsigned range Number of bases that match that aren't repeats
misMatches 5int(10) unsigned range Number of bases that don't match
repMatches 0int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 4int(10) unsigned range Number of inserts in target
tBaseInsert 3586int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName HQ318070varchar(255) values Query sequence name
qSize 506int(10) unsigned range Query sequence size
qStart 0int(10) unsigned range Alignment start position in query
qEnd 503int(10) unsigned range Alignment end position in query
tName GL192339.1varchar(255) values Target sequence name
tSize 5850765int(10) unsigned range Target sequence size
tStart 1976714int(10) unsigned range Alignment start position in target
tEnd 1980803int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 34,70,177,184,38,longblob   Size of each block
qStarts 3,37,107,284,468,longblob   Start of each block in query.
tStarts 1976714,1976930,1977960,197...longblob   Start of each block in target.

Connected Tables and Joining Fields
        ailMel1.all_est.qName (via all_mrna.qName)
      ailMel1.mrnaOrientInfo.name (via all_mrna.qName)
      ailMel1.xenoMrna.qName (via all_mrna.qName)
      ailMel1.xenoRefGene.name (via all_mrna.qName)
      ailMel1.xenoRefSeqAli.qName (via all_mrna.qName)
      hgFixed.gbCdnaInfo.acc (via all_mrna.qName)
      hgFixed.gbMiscDiff.acc (via all_mrna.qName)
      hgFixed.gbSeq.acc (via all_mrna.qName)
      hgFixed.gbWarn.acc (via all_mrna.qName)
      hgFixed.imageClone.acc (via all_mrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
6004985000043586-HQ3180705060503GL192339.1585076519767141980803534,70,177,184,38,3,37,107,284,468,1976714,1976930,1977960,1979849,1980765,
59766100000313277+GQ8491326709670GL192344.15364654167107716850154166,117,279,99,9,175,292,571,1671077,1676590,1683777,1684916,
5945731000042693+HM04780460119593GL192348.1514710712842491287516530,180,130,110,124,19,49,229,359,469,1284249,1285574,1286372,1287060,1287392,
5984031000031787+HQ3180954040404GL192348.15147107182528218274734117,87,103,97,0,117,204,307,1825282,1825648,1827183,1827376,
6134320000000+KP9430374320432GL192348.15147107379144937918811432,0,3791449,
609110000000116626+KC662505110001100GL192349.15059366317235831800841219,6,36,111,147,211,102,81,63,120,122,82,0,19,25,61,172,319,530,632,713,776,896,1018,3172358,3172378,3175322,3175455,3175754,3176185,3176532,3176712,3177492,3178854,3179229,3180002,
5884400000000-KP9430394400440GL192350.148775434232624237021440,0,423262,
5963981000037326+DQ1665123990399GL192350.14877543151588115236064135,48,123,93,0,135,183,306,1515881,1516289,1521171,1523513,
5963981000037326+DQ8523403990399GL192350.14877543151588115236064135,48,123,93,0,135,183,306,1515881,1516289,1521171,1523513,
597335000001656+DQ3491203350335GL192350.14877543168830716892982166,169,0,166,1688307,1689129,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.