Schema for mrnaOrientInfo
  Database: anoCar1    Primary Table: mrnaOrientInfo    Row Count: 231   Data last updated: 2019-05-19
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 82smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom scaffold_0varchar(255) values Reference sequence chromosome or scaffold
chromStart 10214736int(10) unsigned range Start position in chromosome
chromEnd 10297722int(10) unsigned range End position in chromosome
name AF095911varchar(255) values Accession of EST
intronOrientation 5smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        anoCar1.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
82scaffold_01021473610297722AF09591150000
628scaffold_1057549295762932FJ85359962000
586scaffold_1088137767146586EU41964610000
586scaffold_1088137767148940EU41964710000
586scaffold_1088137767148940EU41964810000
586scaffold_1088137767151588EU41964910100
586scaffold_1088137767151588EU41965010000
586scaffold_1088137767151588EU41965110000
586scaffold_1088137767151588EU41965210000
586scaffold_1088137767160789EU41965310000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.