Schema for mrnaOrientInfo
  Database: anoCar2    Primary Table: mrnaOrientInfo    Row Count: 230   Data last updated: 2019-05-17
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 848smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr1varchar(255) values Reference sequence chromosome or scaffold
chromStart 34481661int(10) unsigned range Start position in chromosome
chromEnd 34539814int(10) unsigned range End position in chromosome
name AM503582varchar(255) values Accession of EST
intronOrientation 6smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        anoCar2.all_mrna.qName (via mrnaOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via mrnaOrientInfo.name)
      hgFixed.gbSeq.acc (via mrnaOrientInfo.name)
      hgFixed.imageClone.acc (via mrnaOrientInfo.name)
      hgFixed.refLink.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqStatus.mrnaAcc (via mrnaOrientInfo.name)
      hgFixed.refSeqSummary.mrnaAcc (via mrnaOrientInfo.name)
      knownGeneV39.kgXref.refseq (via mrnaOrientInfo.name)
      knownGeneV39.knownToRefSeq.value (via mrnaOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
848chr13448166134539814AM50358260000
914chr14318659343193010GQ46395940000
914chr14318659343193010GQ46396030000
1296chr19322345193223632AM50357801000
1155chr27474925074778486GU198361900220
1156chr27491706474925240GU944674380290
1315chr29578907695799482EU75536670000
1316chr29582562295839095EU75536780000
1365chr2102295322102303326FJ85359962000
622chr349308994946542GQ48920820000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.