Schema for estOrientInfo
  Database: anoGam3    Primary Table: estOrientInfo    Row Count: 151,395   Data last updated: 2018-01-05
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 664smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom chr2Lvarchar(255) values Reference sequence chromosome or scaffold
chromStart 10356718int(10) unsigned range Start position in chromosome
chromEnd 10357447int(10) unsigned range End position in chromosome
name AA413325varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        anoGam3.all_est.qName (via estOrientInfo.name)
      anoGam3.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
664chr2L1035671810357447AA41332510000
664chr2L1035815210358602AA41332600000
714chr2L1700003017000528AA41332700100
714chr2L1700288017004747AA41334810000
775chr2L2501675725017158AA41335000000
779chr2L2552164825522267AA41334900000
798chr2L2792809827928358AA41335100000
831chr2L3237099432374335AA41335220000
832chr2L3237508732375629AA41335300000
868chr2L3712739937127761AA41335410000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.