Schema for xenoMrna
  Database: anoGam3    Primary Table: xenoMrna    Row Count: 1,735,168   Data last updated: 2018-07-30
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 242int(10) unsigned Number of bases that match that aren't repeats
misMatches 145int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 1int(10) unsigned Number of inserts in target
tBaseInsert 4355int(10) unsigned Number of bases inserted in target
strand ++char(2) + or - for strand. First character query, second target (optional)
qName JO849607varchar(255) Query sequence name
qSize 491int(10) unsigned Query sequence size
qStart 62int(10) unsigned Alignment start position in query
qEnd 449int(10) unsigned Alignment end position in query
tName chr2Lvarchar(255) Target sequence name
tSize 49364325int(10) unsigned Target sequence size
tStart 26555int(10) unsigned Alignment start position in target
tEnd 31297int(10) unsigned Alignment end position in target
blockCount 2int(10) unsigned Number of blocks in alignment
blockSizes 201,186,longblob Size of each block
qStarts 62,263,longblob Start of each block in query.
tStarts 26555,31111,longblob Start of each block in target.

Connected Tables and Joining Fields
        anoGam3.all_est.qName (via xenoMrna.qName)
      anoGam3.all_mrna.qName (via xenoMrna.qName)
      anoGam3.xenoRefFlat.name (via xenoMrna.qName)
      anoGam3.xenoRefGene.name (via xenoMrna.qName)
      anoGam3.xenoRefSeqAli.qName (via xenoMrna.qName)
      hgFixed.gbCdnaInfo.acc (via xenoMrna.qName)
      hgFixed.gbMiscDiff.acc (via xenoMrna.qName)
      hgFixed.gbSeq.acc (via xenoMrna.qName)
      hgFixed.gbWarn.acc (via xenoMrna.qName)
      hgFixed.imageClone.acc (via xenoMrna.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
585242145000014355++JO84960749162449chr2L4936432526555312972201,186,62,263,26555,31111,
5865220000000+-LI324107208104176chr2L49364325134783134855172,104,49229470,
58674318400132952+-EZ97427816094521382chr2L493643251574891593683177,615,135,452,629,1247,49204957,49206028,49206701,
5864382130000255+-KA18636412504421093chr2L493643251575041582103531,3,117,442,973,976,49206115,49206677,49206704,
5861407600139197++JP720311618360615chr2L493643251575081578212120,96,360,519,157508,157725,
586220104002632118+-AK4035369742389chr2L49364325157510157952336,174,114,2,59,275,49206373,49206427,49206701,
586372204062632118+-AK4050801533294939chr2L493643251575101582103294,174,114,294,609,825,49206115,49206427,49206701,
5864771950000155+-JO8808049221673chr2L493643251575101582372559,113,1,560,49206088,49206702,
586388227002662121+-EZ584189824109790chr2L493643251575101582463327,174,114,109,460,676,49206079,49206427,49206701,
58662926800242949+-JO87156612861481049chr2L49364325157510159356584,81,27,592,113,148,235,316,344,936,49204969,49205053,49206028,49206055,49206702,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.