Schema for estOrientInfo
  Database: apiMel1    Primary Table: estOrientInfo    Row Count: 78,081   Data last updated: 2016-06-03
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Group1.41varchar(255) values Reference sequence chromosome or scaffold
chromStart 65649int(10) unsigned range Start position in chromosome
chromEnd 66018int(10) unsigned range End position in chromosome
name AB078166varchar(255) values Accession of EST
intronOrientation 0smallint(6) range Orientation of introns with respect to EST
sizePolyA 3smallint(6) range Number of trailing A's
revSizePolyA 1smallint(6) range Number of trailing A's on reverse strand
signalPos 0smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        apiMel1.all_est.qName (via estOrientInfo.name)
      apiMel1.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Group1.416564966018AB07816603100
585Group10.151051911071AB078181-10000
586Group12.10249026249757AB078157-20000
585Group14.49430494500AB07816703100
586Group2.19134059134625AB07818701000
586Group4.1192466193917AB07815630000
587Group4.1386668387548AB078173-20100
587Group4.12298543300192AB07816320100
587Group4.6286482287978AB07818030100
586Group5.12233513243822AB078160-20000

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.