Schema for estOrientInfo
  Database: apiMel2    Primary Table: estOrientInfo    Row Count: 79,503   Data last updated: 2016-06-08
Format description: Extra information on ESTs - calculated by polyInfo program
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 585smallint(5) unsigned range Indexing field to speed chromosome range queries.
chrom Group1varchar(255) values Reference sequence chromosome or scaffold
chromStart 589int(10) unsigned range Start position in chromosome
chromEnd 1165int(10) unsigned range End position in chromosome
name DB755625varchar(255) values Accession of EST
intronOrientation 1smallint(6) range Orientation of introns with respect to EST
sizePolyA 0smallint(6) range Number of trailing A's
revSizePolyA 0smallint(6) range Number of trailing A's on reverse strand
signalPos 21smallint(6) range Position of start of polyA signal relative to end of EST or 0 if no signal
revSignalPos 0smallint(6) range PolyA signal position on reverse strand if any

Connected Tables and Joining Fields
        apiMel2.all_est.qName (via estOrientInfo.name)
      apiMel2.intronEst.qName (via estOrientInfo.name)
      hgFixed.gbCdnaInfo.acc (via estOrientInfo.name)
      hgFixed.gbSeq.acc (via estOrientInfo.name)
      hgFixed.imageClone.acc (via estOrientInfo.name)

Sample Rows
 
binchromchromStartchromEndnameintronOrientationsizePolyArevSizePolyAsignalPosrevSignalPos
585Group15891165DB755625100210
585Group16171166DB756926000220
585Group16261166DB757775000220
585Group16321166DB776996000220
585Group16581166DB757908000220
585Group111921724DB77635500000
585Group111941732DB76817200000
585Group112211724DB766866000014
585Group115421867DB776644000240
585Group127963570BI51156120800

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.