Schema for intronEst
  Database: bosTau2    Primary Table: intronEst    Row Count: 912,114   Data last updated: 2016-06-03
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 585smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 811int(10) unsigned Number of bases that match that aren't repeats
misMatches 2int(10) unsigned Number of bases that don't match
repMatches 0int(10) unsigned Number of bases that match but are part of repeats
nCount 0int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 3int(10) unsigned Number of inserts in target
tBaseInsert 8339int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName DN544833varchar(255) Query sequence name
qSize 815int(10) unsigned Query sequence size
qStart 2int(10) unsigned Alignment start position in query
qEnd 815int(10) unsigned Alignment end position in query
tName chr1varchar(255) Target sequence name
tSize 102834029int(10) unsigned Target sequence size
tStart 27197int(10) unsigned Alignment start position in target
tEnd 36349int(10) unsigned Alignment end position in target
blockCount 4int(10) unsigned Number of blocks in alignment
blockSizes 544,97,123,49,longblob Size of each block
qStarts 2,546,643,766,longblob Start of each block in query.
tStarts 27197,28469,31254,36300,longblob Start of each block in target.

Connected Tables and Joining Fields
        bosTau2.all_est.qName (via intronEst.qName)
      bosTau2.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
5858112000038339+DN5448338152815chr110283402927197363494544,97,123,49,2,546,643,766,27197,28469,31254,36300,
5857515000023416+CX9523457816762chr110283402927206313783535,97,124,6,541,638,27206,28469,31254,
58582900000411155-CV9836998290829chr110283402927267392515474,97,123,67,68,0,474,571,694,761,27267,28469,31254,36300,39183,
58577610000411155-DT8501997781778chr110283402927328392605413,97,123,67,77,0,413,510,633,700,27328,28469,31254,36300,39183,
5855480000038339-BE6683255480548chr110283402927452363394289,97,123,39,0,289,386,509,27452,28469,31254,36300,
58532010000311252-AW3260143221322chr11028340292764839221493,123,67,38,0,93,216,283,27648,31254,36300,39183,
58571220000411155-DN5462397140714chr11028340292766839537573,97,123,67,354,0,73,170,293,360,27668,28469,31254,36300,39183,
58544217310013513-AW4635655170517chr11028340292767531705266,451,0,66,27675,31254,
5854790000027739-DV8004284801480chr11028340293132339541354,67,358,0,54,121,31323,36300,39183,
58555710000313461+BI9755245580558chr11028340295281666835458,132,100,268,0,58,190,290,52816,52875,63879,66567,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.