Schema for all_est
  Database: bosTau7    Primary Table: all_est    Row Count: 1,809,745   Data last updated: 2016-06-11
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type description
bin 754smallint(5) unsigned Indexing field to speed chromosome range queries.
matches 276int(10) unsigned Number of bases that match that aren't repeats
misMatches 2int(10) unsigned Number of bases that don't match
repMatches 296int(10) unsigned Number of bases that match but are part of repeats
nCount 1int(10) unsigned Number of 'N' bases
qNumInsert 0int(10) unsigned Number of inserts in query
qBaseInsert 0int(10) unsigned Number of bases inserted in query
tNumInsert 7int(10) unsigned Number of inserts in target
tBaseInsert 9int(10) unsigned Number of bases inserted in target
strand +char(2) + or - for strand. First character query, second target (optional)
qName AA908029varchar(255) Query sequence name
qSize 659int(10) unsigned Query sequence size
qStart 6int(10) unsigned Alignment start position in query
qEnd 581int(10) unsigned Alignment end position in query
tName chr11varchar(255) Target sequence name
tSize 109987751int(10) unsigned Target sequence size
tStart 22223225int(10) unsigned Alignment start position in target
tEnd 22223809int(10) unsigned Alignment end position in target
blockCount 8int(10) unsigned Number of blocks in alignment
blockSizes 505,11,7,3,15,20,4,10,longblob Size of each block
qStarts 6,511,522,529,532,547,567,571,longblob Start of each block in query.
tStarts 22223225,22223731,22223744,...longblob Start of each block in target.

Connected Tables and Joining Fields
        bosTau7.all_mrna.qName (via all_est.qName)
      bosTau7.estOrientInfo.name (via all_est.qName)
      bosTau7.intronEst.qName (via all_est.qName)
      bosTau7.refGene.name (via all_est.qName)
      bosTau7.refSeqAli.qName (via all_est.qName)
      bosTau7.xenoMrna.qName (via all_est.qName)
      bosTau7.xenoRefGene.name (via all_est.qName)
      bosTau7.xenoRefSeqAli.qName (via all_est.qName)
      hgFixed.gbCdnaInfo.acc (via all_est.qName)
      hgFixed.gbMiscDiff.acc (via all_est.qName)
      hgFixed.gbSeq.acc (via all_est.qName)
      hgFixed.gbWarn.acc (via all_est.qName)
      hgFixed.imageClone.acc (via all_est.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
754276229610079+AA9080296596581chr1110998775122223225222238098505,11,7,3,15,20,4,10,6,511,522,529,532,547,567,571,22223225,22223731,22223744,22223752,22223756,22223772,22223793,22223799,
7544091030000-AA90802843118431chr1110998775122224484222248971413,0,22224484,
75537238722200+AA90802549024490chr1110998775122380631223810953449,9,6,24,474,484,22380631,22381080,22381089,
8864290011131120-AA96132745316447chr111099877513947947239481022521,4,84,132,189,6,28,32,116,248,39479472,39479493,39479847,39480305,39480833,
8864250003641121+AA9613284510431chr111099877513947947339481019723,86,132,137,8,12,27,0,23,109,241,382,391,404,39479473,39479845,39480305,39480833,39480972,39480980,39480992,
959475601047124481+AA90802653032530chr1110998775149075235490802071438,251,88,4,33,3,16,4,11,5,6,11,8,13,32,70,321,410,414,447,450,466,470,481,490,497,508,517,49075235,49079735,49079987,49080075,49080080,49080114,49080118,49080135,49080140,49080152,49080162,49080170,49080182,49080194,
127557670111122-AA90801970320615chr111099877519056317290563768458,91,16,429,88,146,238,254,90563172,90563231,90563322,90563339,
8414202032300+AA96133145317445chr138421385133626028336264533274,118,33,17,292,412,33626028,33626302,33626420,
8412855016151429+AA96132979618329chr138421385133626029336267642292,14,18,315,33626029,33626750,
841285102820310-AA9613303690308chr1384213851336261553362645394,5,5,4,13,16,5,5,231,61,66,73,79,84,106,126,132,138,33626155,33626159,33626165,33626170,33626174,33626194,33626212,33626217,33626222,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.