Schema for intronEst
  Database: braFlo1    Primary Table: intronEst    Row Count: 154,513   Data last updated: 2016-12-12
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 1551smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 664int(10) unsigned range Number of bases that match that aren't repeats
misMatches 3int(10) unsigned range Number of bases that don't match
repMatches 45int(10) unsigned range Number of bases that match but are part of repeats
nCount 1int(10) unsigned range Number of 'N' bases
qNumInsert 0int(10) unsigned range Number of inserts in query
qBaseInsert 0int(10) unsigned range Number of bases inserted in query
tNumInsert 1int(10) unsigned range Number of inserts in target
tBaseInsert 366int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName AI391435varchar(255) values Query sequence name
qSize 946int(10) unsigned range Query sequence size
qStart 30int(10) unsigned range Alignment start position in query
qEnd 743int(10) unsigned range Alignment end position in query
tName chrUnvarchar(255) values Target sequence name
tSize 926371504int(10) unsigned range Target sequence size
tStart 126662600int(10) unsigned range Alignment start position in target
tEnd 126663679int(10) unsigned range Alignment end position in target
blockCount 2int(10) unsigned range Number of blocks in alignment
blockSizes 678,35,longblob   Size of each block
qStarts 203,881,longblob   Start of each block in query.
tStarts 126662600,126663644,longblob   Start of each block in target.

Connected Tables and Joining Fields
        braFlo1.all_est.qName (via intronEst.qName)
      braFlo1.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
15516643451001366-AI39143594630743chrUn9263715041266626001266636792678,35,203,881,126662600,126663644,
15516111500112778-AI39143765932659chrUn926371504126676869126678273434,377,96,119,0,35,412,508,126676869,126676903,126677707,126678154,
445261115001121673+AI39143765932659chrUn9263715045069041695069064684119,96,379,32,32,151,247,627,506904169,506904639,506906057,506906436,
5875669041131265+BI38699559915595chrUn926371504287434289278577,335,132,9,26,15,93,428,560,569,287434,287511,288550,289074,289252,
736143018011473518-BI38574968118681chrUn926371504598151672331569,179,108,219,87,0,69,248,356,576,598151,598447,599013,671719,672244,
591399102148069702+BI38807451114506chrUn926371504893683903797837,8,15,37,87,45,120,63,14,111,120,153,190,277,322,443,893683,893786,893801,893816,896112,896540,896994,903734,
156459510331465721-BI38393564934649chrUn926371504128344154128350486833,16,111,76,125,50,66,134,0,33,53,164,240,365,415,481,128344154,128344188,128344204,128345141,128346049,128346332,128349527,128350352,
1594564345021842457-BI38658065332653chrUn9263715041323362641323393245102,142,93,146,120,0,113,262,355,501,132336264,132336915,132337648,132338341,132339204,
5923991643043561718-BI38366750512505chrUn926371504100130510034817178,6,40,41,115,63,15,0,181,215,258,300,415,478,1001305,1001487,1001530,1001584,1002274,1003216,1003466,
59337842202104749-BI38341446227441chrUn92637150410518441052997547,158,12,149,38,21,73,236,248,397,1051844,1051897,1052061,1052361,1052959,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.