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Database: braFlo1 Primary Table: xenoMrna Row Count: 6,448,597 Data last updated: 2020-08-20
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
| field | example | SQL type | description |
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| bin | 585 | smallint(5) unsigned | Indexing field to speed chromosome range queries. |
| matches | 152 | int(10) unsigned | Number of bases that match that aren't repeats |
| misMatches | 49 | int(10) unsigned | Number of bases that don't match |
| repMatches | 0 | int(10) unsigned | Number of bases that match but are part of repeats |
| nCount | 24 | int(10) unsigned | Number of 'N' bases |
| qNumInsert | 0 | int(10) unsigned | Number of inserts in query |
| qBaseInsert | 0 | int(10) unsigned | Number of bases inserted in query |
| tNumInsert | 0 | int(10) unsigned | Number of inserts in target |
| tBaseInsert | 0 | int(10) unsigned | Number of bases inserted in target |
| strand | ++ | char(2) | + or - for strand. First character query, second target (optional) |
| qName | CR691904 | varchar(255) | Query sequence name |
| qSize | 228 | int(10) unsigned | Query sequence size |
| qStart | 2 | int(10) unsigned | Alignment start position in query |
| qEnd | 227 | int(10) unsigned | Alignment end position in query |
| tName | chrM | varchar(255) | Target sequence name |
| tSize | 15083 | int(10) unsigned | Target sequence size |
| tStart | 0 | int(10) unsigned | Alignment start position in target |
| tEnd | 225 | int(10) unsigned | Alignment end position in target |
| blockCount | 1 | int(10) unsigned | Number of blocks in alignment |
| blockSizes | 225, | longblob | Size of each block |
| qStarts | 2, | longblob | Start of each block in query. |
| tStarts | 0, | longblob | Start of each block in target. |
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Connected Tables and Joining Fields
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Sample Rows
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| bin | matches | misMatches | repMatches | nCount | qNumInsert | qBaseInsert | tNumInsert | tBaseInsert | strand | qName | qSize | qStart | qEnd | tName | tSize | tStart | tEnd | blockCount | blockSizes | qStarts | tStarts |
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| 585 | 152 | 49 | 0 | 24 | 0 | 0 | 0 | 0 | ++ | CR691904 | 228 | 2 | 227 | chrM | 15083 | 0 | 225 | 1 | 225, | 2, | 0, |
| 585 | 152 | 49 | 0 | 24 | 0 | 0 | 0 | 0 | ++ | CR694338 | 228 | 2 | 227 | chrM | 15083 | 0 | 225 | 1 | 225, | 2, | 0, |
| 585 | 311 | 108 | 0 | 43 | 0 | 0 | 0 | 0 | ++ | AF266190 | 468 | 3 | 465 | chrM | 15083 | 0 | 462 | 1 | 462, | 3, | 0, |
| 585 | 244 | 80 | 0 | 0 | 5 | 198 | 3 | 189 | ++ | DQ849860 | 544 | 3 | 525 | chrM | 15083 | 0 | 513 | 6 | 48,57,60,60,60,39, | 3,123,181,361,425,486, | 0,117,174,351,414,474, |
| 585 | 576 | 217 | 0 | 62 | 1 | 30 | 1 | 27 | ++ | BC124385 | 1170 | 268 | 1153 | chrM | 15083 | 0 | 882 | 2 | 513,342, | 268,811, | 0,540, |
| 585 | 624 | 232 | 0 | 62 | 1 | 42 | 1 | 39 | ++ | AY879113 | 965 | 0 | 960 | chrM | 15083 | 0 | 957 | 2 | 501,417, | 0,543, | 0,540, |
| 585 | 918 | 348 | 0 | 81 | 2 | 39 | 2 | 39 | ++ | AY996924 | 1640 | 0 | 1386 | chrM | 15083 | 0 | 1386 | 3 | 513,444,390, | 0,543,996, | 0,540,996, |
| 585 | 787 | 290 | 0 | 81 | 2 | 229 | 2 | 228 | ++ | BC151991 | 1644 | 0 | 1387 | chrM | 15083 | 0 | 1386 | 3 | 513,255,390, | 0,543,997, | 0,540,996, |
| 585 | 768 | 290 | 0 | 81 | 3 | 247 | 3 | 247 | ++ | DQ437109 | 1650 | 6 | 1392 | chrM | 15083 | 0 | 1386 | 4 | 513,225,23,378, | 6,549,864,1014, | 0,540,855,1008, |
| 585 | 934 | 343 | 0 | 81 | 3 | 243 | 3 | 240 | ++ | AY899292 | 1654 | 3 | 1604 | chrM | 15083 | 0 | 1598 | 4 | 501,444,390,23, | 3,546,999,1581, | 0,540,996,1575, |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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US Server