Schema for intronEst
  Database: caeJap1    Primary Table: intronEst    Row Count: 23,255   Data last updated: 2016-05-28
Format description: Summary info about a patSpace alignment
On download server: MariaDB table dump directory
fieldexampleSQL type info description
bin 589smallint(5) unsigned range Indexing field to speed chromosome range queries.
matches 573int(10) unsigned range Number of bases that match that aren't repeats
misMatches 2int(10) unsigned range Number of bases that don't match
repMatches 22int(10) unsigned range Number of bases that match but are part of repeats
nCount 0int(10) unsigned range Number of 'N' bases
qNumInsert 1int(10) unsigned range Number of inserts in query
qBaseInsert 1int(10) unsigned range Number of bases inserted in query
tNumInsert 3int(10) unsigned range Number of inserts in target
tBaseInsert 2531int(10) unsigned range Number of bases inserted in target
strand -char(2) values + or - for strand. First character query, second target (optional)
qName DV018497varchar(255) values Query sequence name
qSize 606int(10) unsigned range Query sequence size
qStart 8int(10) unsigned range Alignment start position in query
qEnd 606int(10) unsigned range Alignment end position in query
tName chrUnvarchar(255) values Target sequence name
tSize 156378573int(10) unsigned range Target sequence size
tStart 566141int(10) unsigned range Alignment start position in target
tEnd 569269int(10) unsigned range Alignment end position in target
blockCount 5int(10) unsigned range Number of blocks in alignment
blockSizes 47,150,228,12,160,longblob   Size of each block
qStarts 0,47,197,425,438,longblob   Start of each block in query.
tStarts 566141,567030,567544,569097...longblob   Start of each block in target.

Connected Tables and Joining Fields
        caeJap1.all_est.qName (via intronEst.qName)
      caeJap1.estOrientInfo.name (via intronEst.qName)
      hgFixed.gbCdnaInfo.acc (via intronEst.qName)
      hgFixed.gbSeq.acc (via intronEst.qName)
      hgFixed.imageClone.acc (via intronEst.qName)

Sample Rows
 
binmatchesmisMatchesrepMatchesnCountqNumInsertqBaseInserttNumInserttBaseInsertstrandqNameqSizeqStartqEndtNametSizetStarttEndblockCountblockSizesqStartstStarts
58957322201132531-DV0184976068606chrUn156378573566141569269547,150,228,12,160,0,47,197,425,438,566141,567030,567544,569097,569109,
5914242160000145-DV0185056027593chrUn1563785738779498785802567,19,9,576,877949,878561,
6253843250002112-DV0185924468420chrUn156378573530672953072533171,197,44,26,197,394,5306729,5306965,5307209,
6253761440002396-DV0185794287428chrUn1563785735330632533144936,396,19,0,6,402,5330632,5330989,5331430,
6253761440002454+DV0185794287428chrUn15637857353397875340662319,396,6,7,26,422,5339787,5339851,5340656,
627329142000146-DV0186643817379chrUn156378573553561855360362339,33,2,341,5535618,5536003,
627520141000247-DV0186255697569chrUn1563785735535618553622737,331,224,0,7,338,5535618,5535626,5536003,
627487237000146-DV0186725387533chrUn156378573553562355361952334,192,5,339,5535623,5536003,
6295720130115768+DV0185495948594chrUn156378573582847558298287148,90,111,69,105,57,5,8,156,246,357,426,531,589,5828475,5828688,5828825,5829112,5829593,5829766,5829823,
63147741800043180+DV0186985108507chrUn15637857361447206148399559,113,117,57,153,8,67,180,297,354,6144720,6145384,6146504,6147463,6148246,

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.